Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00436 ATGACTGTAAGGCAGAAGACAAAAGGGATAAAACAAAACTTGTGTGTCATGTATTCAATTGCAATGGAATCACCACACTACACAAAGGAGGATCTACACATCATGAAAAGTAAAAGCAAGAAGAAGAACAAACCAAGAGAAATTGGAATGGAAGGCAAAGGTTTAGGAGAAGTGAGAAGGCTTCACATCATTTACTTCCTTAGTCAGATAGGTGGTCGTGCAGATCATCCTCATCTAATTCGTGTTCTTCATCTTACTCGTAATGGGGTTTATCTCAGAGATGTCAAGAGATGGCTTGGGGAATTGAGAGGGAAAGAATTGCCTGAGGTTTTTTCTTGGTCCTACAAGAGGAGGTACAAGAGTGGATATGTGTGGCAAGACTTGTTGGATGACGACCTCATAACCCCCATCTCTGACAATGAATACATCCTCAAAGGATCACAAATCCACACTATCCCATTTGCAACAACTCCTTCTCTTGAAGAAAAGAAAACTATAGTTTGTGATATCCATGCTGAAAAGATGTGTCCTCAATCACAACTTGTAGAGGACAAAGAACACCAGCTGCAGCCGCCACAGTCCTTAACAGAAGAAGAATCTCAGGTTCAAGCAGACCATAATTCTAAAACAAATTCTCCAACAAAAGGGTCATCAGAAATCAGTCAGGACTCGTTGGTCTTCAGCTCAGACAGGTCGTCTGTGACAGATGATGACTCTTCTAAGGTTGAAGAAGAGAAGCACTCAGAGATCAAAACAGGCAAAGAGAGTTTCAATGAAATGCACCAGGAGAAATTAGAGACTTGCACATTGCCTTCCTTGTATCACAATTTATTGATTAAGAAGGGCACCCACAAAGATGACCAAAATAAAACTCACTCACCTGATTCATCCTTGTCCACCATATCATCGTCATCGTCATCTCAATCATCCTTTACTAAGATCAGAAACAATTCTACTAAAGTTTCTAACATATTTCGAAATTGGATCACTTGTGGCACTGTGGAAACAAATGATGCAGCATTCATCCTGATGAACCAGGCTCAAAAAAAGAATTCGAAGGAACCTAACAACATACCTGAAACAAAACCTGAGATTTGTAAGGGAGACCCATTGGGAGGATCAGAAAGGTGTTTTAGGACTTCTTGGGGTCATCATGACCAGAAACAACAATATGGGGCAAGAAAAAGCTTTGACGGAGAGGAAACAAACGGGAGCAGGAAAAAGTTAGGAGACTTGCTAAATCAAACTTCTTCCAAACCATTTGGTGGACCAATTTGCTCGCAATGTGGGAAGTCGTTTAAGCCTGAGAAAATGTACAAACACATGAAGTCTTGTAAAGGAATGAAAGCGTTGGGAAAGTCAGCTCCAAATGTTGAGGAGGCACAGCTTCCGAGATCATCAACTTCATCCCATACACACTACTTTTTGACCAACTAA 1437 0.4085 MTVRQKTKGIKQNLCVMYSIAMESPHYTKEDLHIMKSKSKKKNKPREIGMEGKGLGEVRRLHIIYFLSQIGGRADHPHLIRVLHLTRNGVYLRDVKRWLGELRGKELPEVFSWSYKRRYKSGYVWQDLLDDDLITPISDNEYILKGSQIHTIPFATTPSLEEKKTIVCDIHAEKMCPQSQLVEDKEHQLQPPQSLTEEESQVQADHNSKTNSPTKGSSEISQDSLVFSSDRSSVTDDDSSKVEEEKHSEIKTGKESFNEMHQEKLETCTLPSLYHNLLIKKGTHKDDQNKTHSPDSSLSTISSSSSSQSSFTKIRNNSTKVSNIFRNWITCGTVETNDAAFILMNQAQKKNSKEPNNIPETKPEICKGDPLGGSERCFRTSWGHHDQKQQYGARKSFDGEETNGSRKKLGDLLNQTSSKPFGGPICSQCGKSFKPEKMYKHMKSCKGMKALGKSAPNVEEAQLPRSSTSSHTHYFLTN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00436 478 MobiDBLite consensus disorder prediction 383 408 - -
Phco10g00436 478 MobiDBLite consensus disorder prediction 460 478 - -
Phco10g00436 478 MobiDBLite consensus disorder prediction 453 478 - -
Phco10g00436 478 MobiDBLite consensus disorder prediction 183 233 - -
Phco10g00436 478 MobiDBLite consensus disorder prediction 284 314 - -
Phco10g00436 478 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 44 460 IPR010369 -
Phco10g00436 478 MobiDBLite consensus disorder prediction 182 258 - -
Phco10g00436 478 MobiDBLite consensus disorder prediction 293 314 - -
Phco10g00436 478 MobiDBLite consensus disorder prediction 234 258 - -
Phco10g00436 478 Pfam Protein SOSEKI, plant 62 356 IPR010369 -
Phco10g00436 478 MobiDBLite consensus disorder prediction 383 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00436 Phco-Chr10 4095107 4101803 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco10g00436 DUF966 3.2e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00436 10 4095107 4101803 Phco10g00436 10 4095107 4101803 ECH