Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00406 ATGTATGAAATGGCAATGATGTCTCCATCAAAGAAGAAGGATCGTTATAATGTCGTTTTCTCTCTCATTTTCTGGGGAAATTGTTTTGCTCCAAGAGGCACATGGGTTGATCCGTTTCCGAGCATATCGTTATGCTGTTCACTTCACTTCACTCTTTGCAAATTTTGCAGACATTGTGGGCTCTCCCAAGAGGAGCAGATCATGGAACTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGGCTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACCGGGGTTAGGCTTCACCACCACTTTGTCAATTGGGCCAATCATCACCAGACAAAAGGATCAACAAGATGAACAAGAAGAATTTGAAGAAGAAGAAGAAACCAAGCCAAGGAACAACAGCAACACTCACACAACAGAAGATCCTTCCAAACCCAACAACAACCCAGTTCTGCATCAGCTTGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTATCATCTGAGTTGGGAGGTTCTTCTAGGGGCTTGGACGTGAACGCGCAGCCGCCGCTGGCGGAGGATGAGGCGGAGGAAGTGGCGGCGCTGTCATCATCTCCTAACAGCGCAGCCTCATCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGGAGTTTCTATAAAAGGAAGTATGAGGGTGAAGCTTATGATCAAAGGGCCTCTTCAAGAGCCAGTGATGAAGATGATAACAACGGTAGTGGCGGCAACGCTAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTACGACCTCGTCAAGTAGAAGTGTGGTTTCAAAACCGAAGGGCAAGGACCAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGACCCTAACGGAAGAGAATAGGAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCCTTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAACGTGTGGCCACAAATTCCACATCCACTTCCTCCTCTCTCAGTGCTCCTAATGCCACCATCAATGCAAATTCAGGAGCCATGACCATTGTCAAAACCAGTGGTAGTAACAATGACTCACCCTCCAAAGCCATCGGATTCCCATTTGGCAAACCCAGGTTTCATCCATTTGTTCACACCAGCCAACAACCCCATCAACACCAATCCCCATCATCTTGA 1326 0.463 MYEMAMMSPSKKKDRYNVVFSLIFWGNCFAPRGTWVDPFPSISLCCSLHFTLCKFCRHCGLSQEEQIMELGLSLGDSSRPLLGFMEKPREASNQPGLGFTTTLSIGPIITRQKDQQDEQEEFEEEEETKPRNNSNTHTTEDPSKPNNNPVLHQLDLLPQLYLPWHPPSENGSLSSELGGSSRGLDVNAQPPLAEDEAEEVAALSSSPNSAASSFQMDLCIYNRGGSFYKRKYEGEAYDQRASSRASDEDDNNGSGGNARKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTSSSLSAPNATINANSGAMTIVKTSGSNNDSPSKAIGFPFGKPRFHPFVHTSQQPHQHQSPSS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00406 441 ProSitePatterns 'Homeobox' domain signature. 290 313 IPR017970 GO:0000981|GO:0006355
Phco10g00406 441 MobiDBLite consensus disorder prediction 415 441 - -
Phco10g00406 441 CDD homeodomain 259 316 IPR001356 GO:0003677
Phco10g00406 441 Gene3D - 263 313 - -
Phco10g00406 441 SMART HOX_1 257 319 IPR001356 GO:0003677
Phco10g00406 441 FunFam Homeobox-leucine zipper protein 18 242 320 - -
Phco10g00406 441 SUPERFAMILY Homeodomain-like 246 316 IPR009057 -
Phco10g00406 441 Coils Coil 328 351 - -
Phco10g00406 441 MobiDBLite consensus disorder prediction 111 209 - -
Phco10g00406 441 ProSiteProfiles 'Homeobox' domain profile. 255 315 IPR001356 GO:0003677
Phco10g00406 441 MobiDBLite consensus disorder prediction 168 182 - -
Phco10g00406 441 MobiDBLite consensus disorder prediction 135 153 - -
Phco10g00406 441 CDD bZIP 308 347 - -
Phco10g00406 441 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 128 387 - -
Phco10g00406 441 MobiDBLite consensus disorder prediction 238 263 - -
Phco10g00406 441 SMART halz 315 358 IPR003106 GO:0006355|GO:0043565
Phco10g00406 441 Pfam Homeobox associated leucine zipper 315 349 IPR003106 GO:0006355|GO:0043565
Phco10g00406 441 Pfam Homeodomain 259 313 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00406 Phco-Chr10 3753185 3756036 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco10g00406 Homeodomain 2.8e-15 CL0123