Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00400 ATGGAAAACCACCAAAACCACAAGGCAGAGCCAGAACCTGACAGAGACAAGAACCACCACCATACCCAAGCCTGGGGCACGTGGGAGGAGTTGTTGCTAGCGTTTGCCGTCAACCGCCATGGCTCCAAGGACTGGGACACCGTCGCCATGGAGGTTCAGTCGCGCGCCACGCGCCTCCTCGCCACGGCGCGCCACTGCGAGCAGAAATTTCACGATCTCAGTCGCCGATTCGCCGACCAATGCAACGACGGCGTTACGCCGCCGCAACAGAACGGCGCCGCCGACGGCGACAACTCCGATCACGTCCCGTGGCTAGACGAATTGCGGAAACTCCGTGTCGCCGAACTCCGCCGCGAAGTCCAGCGGCGCGACGTTTCCATTCTGTCTCTGCAGTTGGAGGTGAAGAGGCTGGAGGAGGAGAAAACGAAAGAGAATGACGGTAAAGACGACAAGAAACCAGATCTGGCGGTTTCCGGCGAAGCGCGGGCGGAAAACGACAAAACCGGCGGAGAAGTTGAAGAGGCTGGACCGGCGAATTCCGAACCGGAGAGAACCGCGAACGCTGACAAGATGTTGCCAACAACGGGCGACGAATCGGACCGGGAGAATCAGTCAGTTAACGAGTCTAACTCAACCGGTTCGAGGTTTGATAAAACCGGAGAAGGTGATGCAAAGATAAAAGTCGAACCGGATCCGGTTCAGACCGGTTCGAAAGAACCGGACCCGGTTGCGAGGAAAGGAAAGCCGGTTGGGGAGGAGTCTAATAACGGGAGCTACGATGCGTTAGCTAAGGTGCCAACGTGTGAGTCGGTGCCTCCAAGTGACGAGAGGAAGGTGGAGCAGGACGATGACTCGTCTGAGTTGCACGACTCGGTGGCTCACTCTGGAGAGGGAGGCACGAGGGAGAGCAGCGAGGTGCAGAGCTCAGCCAGCTTGACGCGGAAGAGGAAGACGCGGCGGAGAAAAGAGGTTTCCGGCGGCGACGGTCGTGGAGGTGGGACCTCCACACCGCCGGAGAACGACGAGGTGGCGATGGTTAAATCAGAACCGTTCGTTGGGGTTTTGGAGTTGATCAAGGGGCACGAGCACAGCTCATTCTTCGAGCGCCGTCTTGAAAGCCAGCTGGAGTCGGACAGATACAAAGACATAGTGAAACAGCCACTGGACCTGGAAACCATACAATTAAGAATCCAGAAAGGTCAGTATTCCTCGTGCACCAGTGCATTCTTCCGCGATCTCCTCCTCCTTTTCACCAACGCCACCGTGATCTTCCCCTATGACTCTCCGGAGTCACAGGCGGCACGGCAGCTGCACCGCCTTGTCACCACCGAGATGAAGAACTACGGCCAAGCACAGTCCGACCCTATCCCCCGGAAGAACGATTCGCTCCCTCCAAACGTACCATTAGCCAAACCCGATTCTCTCTTTTCCAAGAACAAAGCCTCTGGTCCTATATTGGTTTGCCGCAAACGCAGTTCAATGTCAGCGAAACCTTCCCCGACCACTTTTGGTCAAAAGGGGGCTGACCAACCCATCTTCAATGACAAGAAGGAAAGGCCATCTTCTGATTCAAAACCTCCCATGAAACCACCTTCTTCTGATACAGACGAAGAGGAGCCTCCCAAGGCCAAGGAAAAGCCTGTCACTGGAGCGAGAAGCCTTAGAAGGAGCAACAAGAACCTCAACAACAAGAAACTTTCCTCTAACTCAACTCCTAAGGCAGGGTCCTCCGGTAACAAGCCATCTGAGACCCTTAAACCAGAGAAGAGCAAAGCAGAGGGAGGGCCTGACAAGAAGAGGAATGCTGCTGCAGATTTCTTGAAGCGGATAAAGCGAAATACTTCAGTGGAAGCAGTGAAGGGTGGTAGCGGTGGTGGTGGTGGTGGAGGAGGAGGAAGTAGTAGCAGCAGCAAGGGAGGTGGAGGTGGTGTTGGTGTGAAAGAGCAGAAGAAAATGGTGAATAATGGAAAGGGGGATAAAGGGAAAGAAAGGGCATCAAGGCATAGTGCTGGAGGGGGATCAGGGTCTGGGGATAAAAGGAATAAGAACATTGATAACAACTCTCAGTCGAAGAGGAGTGTAGGTAGACCTCCAAAGAAAGTAGCGGAGACAAATGCAGGAAGTTCAAAGCGTGGGAGGGAAAATAGTGCTAGTGCTGGCAAGGATAAGCGACCGAAGAAACGTTCCAAGAAATGA 2196 0.5446 MENHQNHKAEPEPDRDKNHHHTQAWGTWEELLLAFAVNRHGSKDWDTVAMEVQSRATRLLATARHCEQKFHDLSRRFADQCNDGVTPPQQNGAADGDNSDHVPWLDELRKLRVAELRREVQRRDVSILSLQLEVKRLEEEKTKENDGKDDKKPDLAVSGEARAENDKTGGEVEEAGPANSEPERTANADKMLPTTGDESDRENQSVNESNSTGSRFDKTGEGDAKIKVEPDPVQTGSKEPDPVARKGKPVGEESNNGSYDALAKVPTCESVPPSDERKVEQDDDSSELHDSVAHSGEGGTRESSEVQSSASLTRKRKTRRRKEVSGGDGRGGGTSTPPENDEVAMVKSEPFVGVLELIKGHEHSSFFERRLESQLESDRYKDIVKQPLDLETIQLRIQKGQYSSCTSAFFRDLLLLFTNATVIFPYDSPESQAARQLHRLVTTEMKNYGQAQSDPIPRKNDSLPPNVPLAKPDSLFSKNKASGPILVCRKRSSMSAKPSPTTFGQKGADQPIFNDKKERPSSDSKPPMKPPSSDTDEEEPPKAKEKPVTGARSLRRSNKNLNNKKLSSNSTPKAGSSGNKPSETLKPEKSKAEGGPDKKRNAAADFLKRIKRNTSVEAVKGGSGGGGGGGGGSSSSSKGGGGGVGVKEQKKMVNNGKGDKGKERASRHSAGGGSGSGDKRNKNIDNNSQSKRSVGRPPKKVAETNAGSSKRGRENSASAGKDKRPKKRSKK 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00400 731 MobiDBLite consensus disorder prediction 584 615 - -
Phco10g00400 731 CDD Bromodomain 354 445 - -
Phco10g00400 731 MobiDBLite consensus disorder prediction 218 234 - -
Phco10g00400 731 SMART bromo_6 123 450 IPR001487 GO:0005515
Phco10g00400 731 MobiDBLite consensus disorder prediction 679 694 - -
Phco10g00400 731 MobiDBLite consensus disorder prediction 1 22 - -
Phco10g00400 731 MobiDBLite consensus disorder prediction 448 731 - -
Phco10g00400 731 MobiDBLite consensus disorder prediction 553 583 - -
Phco10g00400 731 MobiDBLite consensus disorder prediction 511 552 - -
Phco10g00400 731 MobiDBLite consensus disorder prediction 271 296 - -
Phco10g00400 731 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Phco10g00400 731 Pfam Bromodomain 355 435 IPR001487 GO:0005515
Phco10g00400 731 Gene3D - 351 461 IPR036427 GO:0005515
Phco10g00400 731 SUPERFAMILY Bromodomain 352 455 IPR036427 GO:0005515
Phco10g00400 731 MobiDBLite consensus disorder prediction 297 311 - -
Phco10g00400 731 MobiDBLite consensus disorder prediction 494 508 - -
Phco10g00400 731 Coils Coil 127 147 - -
Phco10g00400 731 MobiDBLite consensus disorder prediction 652 667 - -
Phco10g00400 731 ProSiteProfiles Bromodomain profile. 359 431 IPR001487 GO:0005515
Phco10g00400 731 MobiDBLite consensus disorder prediction 140 171 - -
Phco10g00400 731 MobiDBLite consensus disorder prediction 80 102 - -
Phco10g00400 731 CDD SANT 24 73 IPR001005 -
Phco10g00400 731 MobiDBLite consensus disorder prediction 140 344 - -
Phco10g00400 731 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 13 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00400 Phco-Chr10 3635201 3639575 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco10g00400 Bromodomain 1.1e-10 No_clan