Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00367 ATGGTTGCAATGGACCCCCTTGTGTCATCAAGAGCCAGACTCAAGGAGCTGAAGGACCTGAGCCTTGGATTTGAATCTGGAAAATTTGATGTGATTGCAAAAGATATTGCAAAGATGAGTGTTATGTATAGTCCTGTTCTCAAGTACTCAGATGTGGAGCATCGGCTAATGAAAAACCAAGAAATGGATTCAAGTATTGGAAATCCACAACAATACTGTCACCAACCCAATTCTGGACTACAGAGGTATTGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTAATTGACAACAATATTCATGACTGTTTCAACGAGGAATCTTTCACAAGTGAGATTCATCAGCATTATCCTCCATCCACAAGTTCAGAAATGGACACCATGTTGTCCAAATTGCTACCATCCAACAATGGATGGAGCAATTCAGAAGCTTTGCAAGAATTTGGAAGCAAGCCTGTAAAGCAGGAAATAGGGGAATCTGTTCCACAAGGACCACCACCACAACAGAATGAATATTCTTATGGTGGCTCTCAGTTAATTTACCAATCACAGAAAATTCAAGGCTTGCCAAATGGTTCTTCCAGTGATTTTGGTAGCTCTTTTGGTGTGGTTAACTCCATGGCCTCAGAGAACCCCATTCAATCTAAATTGGGTGCCAGGAATTGCTCCAATCTCTTCAGGCAAAAGAGTTCCCCTGCTGGATTTTTCTCCATTGAAAATGATCTTGCAGCATTAAGAGAAGTAGGTGCCTTTAAGGCCAATGATGTATCAAATGGACAGGCTACTACATCAACTAGTGGGTTGAGTAGTTCTCTTGCTTTCTCATCTAGGCCATCTTCATGCCTCAAACATATGCCACAAATTGCTGAAAATGGAAATGAAAGCCTTGAAGAAAATTGTGACCAAAGTAGGATCCTAGTTAATGAAGATGGTAGCTCAAAGTTCTGCATACCTAGCTTCACCAGTGAAATATGGGAAAGTTCTTCATTCAACGCCGCCAAAACAGAAAGTGATGATGAAATCATGTTTTCCACTTCAAATGGTTTGGAATCTCAGGAATCAGACTTTAGCTATCAAAATATTGGTTTGACCCACCATTTGAGCCTACCTAGCTCTTCTACTAAGATGTCATCCATACAGAGGTTTCTTGAAATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAGAATTAGTGAAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAGTCAGAAAAGCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGTACATCAAGGACCTTCGGCAACAAGTTAAGGTTCTCTCAGATTGCAAGGCAAAGTGCAAATGTACAAGTAATGAGAAGCATTCCTCTAGAACTTGTGCCTGA 1431 0.4095 MVAMDPLVSSRARLKELKDLSLGFESGKFDVIAKDIAKMSVMYSPVLKYSDVEHRLMKNQEMDSSIGNPQQYCHQPNSGLQRYCSAPSSLLASLIDNNIHDCFNEESFTSEIHQHYPPSTSSEMDTMLSKLLPSNNGWSNSEALQEFGSKPVKQEIGESVPQGPPPQQNEYSYGGSQLIYQSQKIQGLPNGSSSDFGSSFGVVNSMASENPIQSKLGARNCSNLFRQKSSPAGFFSIENDLAALREVGAFKANDVSNGQATTSTSGLSSSLAFSSRPSSCLKHMPQIAENGNESLEENCDQSRILVNEDGSSKFCIPSFTSEIWESSSFNAAKTESDDEIMFSTSNGLESQESDFSYQNIGLTHHLSLPSSSTKMSSIQRFLEIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCTSNEKHSSRTCA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00367 476 Pfam Helix-loop-helix DNA-binding domain 404 448 IPR011598 GO:0046983
Phco10g00367 476 SMART finulus 404 454 IPR011598 GO:0046983
Phco10g00367 476 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 87 468 - -
Phco10g00367 476 FunFam Transcription factor bHLH130 family 399 468 - -
Phco10g00367 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 401 464 IPR036638 GO:0046983
Phco10g00367 476 Gene3D - 400 472 IPR036638 GO:0046983
Phco10g00367 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 398 448 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00367 Phco-Chr10 3319920 3322565 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco10g00367 HLH 1.4e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00367 10 3319920 3322565 Phco9g02251 9 47817049 47819821 ECH
Phco10g00367 10 3319920 3322565 Phco10g00367 10 3319920 3322565 ECH