Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00354 ATGGGACCCACAGCAGGTGCAGAAGAAAATCCAAAACGGGGCAAAAAGGAAACAGTCTCTAAATGCACAGAGAACAACACGGAGCCATGCAAAGTTGCCGTTTCCAGCCTGACCAACCTCTCTGCTCAGTCGTTTGAGATCGAGATCAAAAGAATCGACAATGCCAGCAGCAGGCAAGTCACCTTCTCCAAGCGCAGAACAGGCTTGTTCAAGAAGGCCCAAGAACTCTCCATTCTTTGTGACTCCGAGGTTGCCGTCATAGTTTTTTCCAACACTGGCAAGCTCTTCGAGTTTTCCAGTTCCGGCATGTTGCGTACACTTTCAAGATACAACAAATGTCTTGGTTCTACTGATGTTACTGTAGCAGAAATTAATTCACAGAAGGAAGATTCTAAGATGGTGGACATTCTAAGAGACGAAATTTCAAAGATAGAAACAAAGCAATTACAGTTATTGGGCAAGGATCTGTCAGGATTGGGAATAAAGGAATTGCAAAATTTAGAACAGCAACTTAGTGAGGGATTATTGGCTGTCAAGGCAAGAAAGGAGGAACTACTTATGGAGCAGCTGGAGCAATCTAGAGTTCAGGAACAGCGGGTTATGTTGGAGAATGAAACTTTGCGCAGACAGATTGAGGAGCTTCGTTGTCTGTTTCCGCAATCAGAAAGCATGGTGCCATTTCAATATCCACCTTCTGAAAGAAAGAACACCTTTGTAAATACTGGTGCCAGATGTCTCAACTTGGCCAATAACTGTGGCAATGAGAAAGGAAGTTCAGACACAGTATTTCATTTGGGGTTGCCTGCTGGTGTTCAAGAGGAAGGCCCCCAAGAAAGAAACCTTTTCAAATGA 852 0.4401 MGPTAGAEENPKRGKKETVSKCTENNTEPCKVAVSSLTNLSAQSFEIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDSEVAVIVFSNTGKLFEFSSSGMLRTLSRYNKCLGSTDVTVAEINSQKEDSKMVDILRDEISKIETKQLQLLGKDLSGLGIKELQNLEQQLSEGLLAVKARKEELLMEQLEQSRVQEQRVMLENETLRRQIEELRCLFPQSESMVPFQYPPSERKNTFVNTGARCLNLANNCGNEKGSSDTVFHLGLPAGVQEEGPQERNLFK 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00354 283 Pfam K-box region 124 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco10g00354 283 PRINTS MADS domain signature 44 64 IPR002100 GO:0003677|GO:0046983
Phco10g00354 283 PRINTS MADS domain signature 64 79 IPR002100 GO:0003677|GO:0046983
Phco10g00354 283 PRINTS MADS domain signature 79 100 IPR002100 GO:0003677|GO:0046983
Phco10g00354 283 Gene3D - 54 120 IPR036879 GO:0003677|GO:0046983
Phco10g00354 283 SMART madsneu2 47 101 IPR002100 GO:0003677|GO:0046983
Phco10g00354 283 ProSiteProfiles K-box domain profile. 127 217 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco10g00354 283 MobiDBLite consensus disorder prediction 1 22 - -
Phco10g00354 283 PANTHER SERUM RESPONSE FACTOR HOMOLOG 46 205 - -
Phco10g00354 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 51 98 IPR002100 GO:0003677|GO:0046983
Phco10g00354 283 ProSiteProfiles MADS-box domain profile. 46 102 IPR002100 GO:0003677|GO:0046983
Phco10g00354 283 CDD MADS_MEF2_like 47 116 IPR033896 GO:0000977|GO:0045944
Phco10g00354 283 Coils Coil 197 217 - -
Phco10g00354 283 SUPERFAMILY SRF-like 46 116 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00354 Phco-Chr10 3192701 3199601 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco10g00354 K-box 9.6e-17 No_clan