Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00342 ATGAAGTTCCATACATGCGATAGTGTTTGCATTACAGATTGCATTCTTGCTACTAGAAAATGTCTGATGCAACTAGCGCGTCTATATATTTCTTATGTTTGTATAATTTGTGGCTCAAATGGAAAATTCATGGGAAATGCCCCCAGTGCCCCATCCTCATGGGTGATGTTTGTCAGTGGAAGAACAGTTCCTCATTTTGTATCTTACAATACAATCCTAAGACTTACCCTTTGCGCGGAAATTGAGGCTAAAGAACAATCTGGAGCAACGGATGGACTTCCATGGGTTAAATCCTACCGAGAAGGAACCTGTAAGTTACATATGAAAAAAACAGTGATGCTTCTGGTGCCACCAAGGGCCAGTATTATTCTGTGCCATATTGCTCCACTACGCCTTGGATTCTCTCTCCCCTTCCATCTAACTTCAATTTTAAAAAGGTTTTTCCTTTATGCTCAGTGCTGTATTATTGGGAAGAGAATCCAACTGGGACCGCTCAAAATGAATTCTTTGACTGGTTTTGTTCTAGCTGATTATTCGTTTGGGGCGCAGAAAGAAAACATGGATGATGGAAATGATGAGCTTTCTGATAAGCTTTCAAATAATGTTCTATTTTTGAATCCAGAGTCATCTAGCAGTTTTCAGGCTTCAGCATCGGTGAACACAGTTCCTGAATTATGTAGGAGTAGCAGCAGAACATGCACCCACACTCACACATGCAACCCACCTGGCCCTGATGCTGCTCACACACACACATGCTATCACTCGCACACCCAAATTTTTGGAACTGAAGATGATGACGACAAGGAGCACACCAACTCCAAACCAAAAAGGCCTTCTGGCAACCGAGAGGCAGTTAGGAAGTATAGGGAAAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCGTTTGGTGAATCAGCAACTAGCGAGGAAACTACAAGGGCAGGCACTTCTTGAAGCAGAATTGGCAAGGTTGAGGAGCATTTTGGCACACCTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTTCCCCTTTCAAAATCAGTGTAACTCTTACATTCTCAAAGAAGGGGATGCTGGTTTGCTGTCTACTGCAAGGACAATTGGCCTTCAGTGTCAGAACAACTTGCCATGCTTCCATCCTCATGCAGGGTCATCATCCCAGGTCAACATTTGTGCATATGGAAAGTCTGTGAGTCCATGGGAAGGAAACTGCCAACCTGAAATTGTAGATTGTCAAGTAGATGCAAATAACTTGATCAGTACTGAAGGACAAACTGTGGAGACAGTGGATAACTTCTTGTCATCTGCATCTCAAGAGGGATAG 1341 0.431 MKFHTCDSVCITDCILATRKCLMQLARLYISYVCIICGSNGKFMGNAPSAPSSWVMFVSGRTVPHFVSYNTILRLTLCAEIEAKEQSGATDGLPWVKSYREGTCKLHMKKTVMLLVPPRASIILCHIAPLRLGFSLPFHLTSILKRFFLYAQCCIIGKRIQLGPLKMNSLTGFVLADYSFGAQKENMDDGNDELSDKLSNNVLFLNPESSSSFQASASVNTVPELCRSSSRTCTHTHTCNPPGPDAAHTHTCYHSHTQIFGTEDDDDKEHTNSKPKRPSGNREAVRKYREKKKAHTAYLEEEVKKLRLVNQQLARKLQGQALLEAELARLRSILAHLKGKIDSELGAFPFQNQCNSYILKEGDAGLLSTARTIGLQCQNNLPCFHPHAGSSSQVNICAYGKSVSPWEGNCQPEIVDCQVDANNLISTEGQTVETVDNFLSSASQEG 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00342 446 PANTHER CCAAT/ENHANCER BINDING PROTEIN 183 349 IPR031106 GO:0003700|GO:0006351
Phco10g00342 446 MobiDBLite consensus disorder prediction 260 291 - -
Phco10g00342 446 Gene3D - 262 338 - -
Phco10g00342 446 SMART brlzneu 269 336 IPR004827 GO:0003700|GO:0006355
Phco10g00342 446 SUPERFAMILY Leucine zipper domain 276 318 IPR046347 GO:0003700|GO:0006355
Phco10g00342 446 CDD bZIP 281 328 - -
Phco10g00342 446 Pfam Basic region leucine zipper 273 326 IPR004827 GO:0003700|GO:0006355
Phco10g00342 446 MobiDBLite consensus disorder prediction 260 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00342 Phco-Chr10 3087246 3089724 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco10g00342 bZIP_2 7.9e-13 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00342 10 3087246 3089724 Phco10g00342 10 3087246 3089724 ECH