Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00306 ATGAAGAGCCAACAGATTCTCATGCTAATGATTTACACTACTTTCTTTTGTTTCATGTCCACTTCCTCTCATCAAGATACTGTTACTATTACCCCAAATCACTCCATACAATATCATGACACCCTTGTTTCTTCAGCAGGAACCTTTGAAGCAGGATTTTTCGACTTTGGAAACTCAAGCAGACAATATTTTGGTATATGGTACAAGAGCATATCACCTAGGACTATTGTGTGGGTTGCCAACAGGAATGCCCCAGTACAAAACTCAACAGCAGTTCTGAAACTTACTCATCAAGGAGATCTTGTCATTCTTGATGGCAGAGTGTGGTCCTCCTCCAACTCATCAAAAATTGAAGTGAAACCAGTTATGCAGCTTTTAGATTCAGGAAACCTTGTTGTGAAAGATGGAGAGAGCTCAGAGAATCTCTTGTGGCAAAGCTTTGATTATCCTGGAGATACTTTCCTTCCAGGAATGAAACTGAAAAGCGATTTTGTTACTGGTCCATATCAATATCTCACGTCTTGGAGGGACAATGAAGATCCAGCTGAAGGTGAGTTTTCTTATAAGATCGATACAAGGGGCTTTCCTCAACAAGTTACTACAAGCGGAACCACAATTTCGTACAGCACAGGGCCTTGGAATGGCTATCTTTTTAGTGGAGTTTCTTGGGACAGAATGCACAGATTCTTGAATTTCTCTTTAGAGTTCACTAACAAAGGGGTTTCTTATGGATATGAAACGTTAAAAAGTTCAGTGCTTACTATAACAATGCTCAAGCTCAATCCAAGAGGGGGTACAGAGCGTTCTCTATGGTCAAACAAAAAACAGAGTTGGGATATTGTAAACACTCATCCAATAGACCAGTGTGAATATTTTGCAGCTTGTGGTGTCAACTCTATCTGCAACAGTGATGATCTTCCAATATGTGAATGCTTGCAAGGTTTCACATCAAAGTTTCAAGCAAAGTGGGATCCCCATGATTGGTCTGCTGGTTGTGTCAGAAGAACAAAATTAAGTTGTGATAATGGAGATTGGTTTAAGAATTACACAGGAATAAAGTTGCCAGAAACGTCTTCTTCCTGGTTTAACAGGAGCTTGAGCCTTGAGGAATGTGAGACATTGTGTTTGAGAAACTGCTCTTGTACTGCATATACAAATTTAGATATTAGAGATGGTGGAAGTGGTTGCTTGCTTTGGTTCGATGGCATTGTGGACATGAGAACTCACACTAATCGAGGACAAGAAATTTATATACGACTGCCATTCTCTGAACGTGATCAAAGAAGGAATAAGAGGGACCTAAATCGAAAGAGGCTTGCAGGGATTCTAGTAGGACTTCTTGCACTCATAATTGGACTAACAATTCTTTTGTGGGCGACTTCAAAGAGTATAAAAGGGATGAAGCTACCCAAGCCAGTAGTGAAAAAAGCTATTTCGTGGAAGCACATGATGGAGAAGGAAGAGGACAGCTTACCAACAATATTTGATTTTTCAACCATTGATGTTGCCACAAATCATTTTTCTAACAGAAACAAGTTAGGAGAAGGTGGCTTTGGAACAGTACACAAGGGCACATTGATAAATGGACAAGAGATTGCAGTTAAGAGACTTTCAAAAACTTCTAGACAAGGAACTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAGAAGTTGTTGATCTATGAATTCATGCCCAACAGAAGCTTGGATTACTTTATTTTTGATACAATGCAAGGCAAATTACTAGATTGGACCAAGCGCTTGGAAATTATCGAGGGAATTGCTCGAGGTCTTATGTATCTTCATCAAGATTCTAGACTTAAAATAATACACAGAGATATCAAAACAAGTAACATTCTCCTTGATAACAATATGATTCCAAAGATATCAGATTTTGGATTAGCAAGAATATTTGGAGGAGATCAAGCTGAAGAAAAAACAAACAGAGTGATGGGAACGTATGGTTATATGTCTCCAGAATATGCAGTGCATGGTTCTTTCTCTACCAAATCTGATGTTTTCAGTTTTGGTGTAATTGTTATTGAGATAATTAGTGGGAGGAAGAATCGTGGATTTCGTGACCCTCACCATCATTTTCTCAACCTTCTAGGCCATGCGTGGAGATTATGGATTGAAGAAAGGCCATTGGAGTTAATACATGACATATTAGATGATAGTGCAGCCTTATCTGTAGAAATATTACGGTGTATTCAAGTGGGTCTGTTGTGTGTACAACAGAATCCAGAAAATAGGCCTAACATATCATCTGTTGTTTTGATGTTAAATGGCGAGAAGTTACTACCAAAACCAAGCCAACCTGGATTCTATATAGGTGAAGATAATAAAGCTGACACTGGATCTTCAAAGCAATATGAAAGTTGTTCAGTAAATGAAGTTTCAATGTCATCCTTAGGGGCGCGATAG 2481 0.3873 MKSQQILMLMIYTTFFCFMSTSSHQDTVTITPNHSIQYHDTLVSSAGTFEAGFFDFGNSSRQYFGIWYKSISPRTIVWVANRNAPVQNSTAVLKLTHQGDLVILDGRVWSSSNSSKIEVKPVMQLLDSGNLVVKDGESSENLLWQSFDYPGDTFLPGMKLKSDFVTGPYQYLTSWRDNEDPAEGEFSYKIDTRGFPQQVTTSGTTISYSTGPWNGYLFSGVSWDRMHRFLNFSLEFTNKGVSYGYETLKSSVLTITMLKLNPRGGTERSLWSNKKQSWDIVNTHPIDQCEYFAACGVNSICNSDDLPICECLQGFTSKFQAKWDPHDWSAGCVRRTKLSCDNGDWFKNYTGIKLPETSSSWFNRSLSLEECETLCLRNCSCTAYTNLDIRDGGSGCLLWFDGIVDMRTHTNRGQEIYIRLPFSERDQRRNKRDLNRKRLAGILVGLLALIIGLTILLWATSKSIKGMKLPKPVVKKAISWKHMMEKEEDSLPTIFDFSTIDVATNHFSNRNKLGEGGFGTVHKGTLINGQEIAVKRLSKTSRQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTMQGKLLDWTKRLEIIEGIARGLMYLHQDSRLKIIHRDIKTSNILLDNNMIPKISDFGLARIFGGDQAEEKTNRVMGTYGYMSPEYAVHGSFSTKSDVFSFGVIVIEIISGRKNRGFRDPHHHFLNLLGHAWRLWIEERPLELIHDILDDSAALSVEILRCIQVGLLCVQQNPENRPNISSVVLMLNGEKLLPKPSQPGFYIGEDNKADTGSSKQYESCSVNEVSMSSLGAR 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00306 826 PIRSF SRK 1 826 IPR024171 GO:0004674
Phco10g00306 826 Gene3D - 21 147 IPR036426 -
Phco10g00306 826 Pfam S-locus glycoprotein domain 208 318 IPR000858 GO:0048544
Phco10g00306 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Phco10g00306 826 SMART serkin_6 507 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00306 826 SMART ntp_6 341 420 IPR003609 -
Phco10g00306 826 CDD STKc_IRAK 513 782 - -
Phco10g00306 826 ProSiteProfiles Protein kinase domain profile. 507 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00306 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 582 - -
Phco10g00306 826 Gene3D Transferase(Phosphotransferase) domain 1 583 787 - -
Phco10g00306 826 SUPERFAMILY Protein kinase-like (PK-like) 488 780 IPR011009 -
Phco10g00306 826 Gene3D Hepatocyte Growth Factor 337 418 - -
Phco10g00306 826 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 771 - -
Phco10g00306 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 181 IPR036426 -
Phco10g00306 826 Pfam PAN-like domain 340 406 IPR003609 -
Phco10g00306 826 Pfam D-mannose binding lectin 75 176 IPR001480 -
Phco10g00306 826 Gene3D Phosphorylase Kinase; domain 1 480 582 - -
Phco10g00306 826 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524
Phco10g00306 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 788 - -
Phco10g00306 826 SMART blect_4 33 150 IPR001480 -
Phco10g00306 826 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Phco10g00306 826 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Phco10g00306 826 Pfam Domain of unknown function (DUF3403) 786 826 IPR021820 GO:0004674
Phco10g00306 826 CDD B_lectin 41 150 IPR001480 -
Phco10g00306 826 CDD PAN_AP_plant 336 421 - -
Phco10g00306 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 420 - -
Phco10g00306 826 Pfam Protein tyrosine and serine/threonine kinase 510 776 IPR001245 GO:0004672|GO:0006468
Phco10g00306 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00306 Phco-Chr10 2821960 2826037 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00306 PK_Tyr_Ser-Thr 6.8e-48 CL0016