Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00275 ATGTCCAGCGACACCTCCTTCGTGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTCAGTCATCGCGACTCTGATCCAGCCTTTGGCGAGCGCTGCGAAGTATTCAACGACGCGGGCGAGGTCGGGTTCCGCTCCCAAACCGGCGTCGTTTTGTCTCCGGTGCTGAATTCGTCGCAATGCGGCGGAGGATCGAAAACCAAGAGGACGCACAGCGTTGGGATGGTGAATGGGAGCATGAGCGTGGTTCACCAGCTCCACGCTATGGTCACCCGCAAGTGCATGAGAATCGACGCACGCGTGGTGTGCGTCGAGGCGCCTAGGGTTGTGCTTCTGGTTGACGTGTACCTTCCTATTCACGTGTGGAGTGGCTGGCAGTTCCCGCGGTCGGGGGCGGTTGCCGCCGCCGTTTTTCGCCATCTGAGCTGTGATTGGGATGAGCGAAGTTCAATGCTTTCATATCCAGATTATTGTAGAAAGACTCATGGAGCAAATGAGAGTATTTGGAACCTTTCTGATTGTCATGTACTTTGTTGCAAGCTCCATTCCCATGTTAGCAGTTCTTCAAGGAAAAGGCTATTTGAACTTCATGAACTTTTCAAGACACTACCTGGCGTTGGAAAACAGCGGATGTTTAATAGCTCGAAAATAATTCCTATGGATCACTCATCCAGATCAGGCATCTGGGAGATATCTGATGATATTTTAACTAAAATTTTATCTTCCCTAGACCCAATGGACCTCACTAGGGTTTCTGAAACATGTCATCATCTAAGATCATTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTGCCACACCCTTTATATGCAGTTCTCTCAACTGAAGATGGCCTTAGTTTCCACGTAAATACTGTTTCTGGTGAAATTGTCACTGGGGAAGCTCCCACCATCAGGGATTTTCGGGGAGGAATGTTTTGTGATGAGCCTGGATTGGGTAAGACTGTAACAACTCTCTCTCTTATTATGAAGACACGAGGTACATTGGCAGATCCACCGGATGGGGCACAAGTTGTCTGGTGTAAACATAATGGTAATCAGAAATGTGGTTATTATGAGATCAGTGGTAATAACATAACTGGTTGTTCTACATTGGGTAAAAGGGATGTGAGCCAACATATCAGTAGAACTAGTGATAACCATGATTACTCCTCCAAAAGAGCCAGAATGTCAAATCCTGATCAGCAAATCACTAAACTTCAGGGTTCATGTTCCATGGAGGTGAAGAAATCACCTGTAAAGGCATGCTTTAAGGAATCTATGCATTCAAATCAGTACACTAGGAGTTTGAGCCGGATAAAGAAAAATCTATGCTTCACATATGAAGATGAAGCTATGATTTCCAAGGAAAGAGAAATTGGTGAAGGATTAATTGAAGCAAAGCATGCATCAGATGTTACACCTCATGTATCTCAAAAGAAGCTGCCTGGGAAGCCTGAAGGTGATCTTTTTGAGTACAATGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGCAGACAATAGTATGGCTAGTTCTAGTGCAGCGTGGTTTTGTAGTATGAACACTGACCCTCTTTATGAAAGTTGTAGTGTCCCTGAACAACATTTTCATAATACCTCAAAGATAACACACTTGCCAGGTTTTCACTTAAAAGGAACTCATGGCGGTGAGAGACAAAATGTTTCTTTTTTCACCAGCGTGCTCAAGGAGCACCACTCATTGATAAATTCTCAGACAAGGAGAGCCTTGACGTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGGAATGGAAACAAATGGAATAAGAGGTCCCTTTTTAAACACGTGTACTGCATCTAGTAGACATTTTAATGCGTTCCACAAAGTATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGATAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTTAACAATTTGACTTTTGATGTGACTGCCCTTGGCATGGCACTCCGTGAGCCTATAGATTTTGTTAGGTTATACATGTCAAGAGCTACCCTCGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCGAATTTATGTTTGGACTGATCACCGGAAGCCATCTTTGCATTGTCTTGCGTGGGATTACGATGTTGTCTTAACCACTTTTAGTCGTTTGAGTGCAGAGTGGGGCCCTCGTAAGAAGAGTGTTTTGATGCAAGTGCATTGGTTTAGAGTAATTTTAGATGAGGGGCACACTCTTGGGTCTAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATCTCATTGACGGCTTCTAATCGATGGATACTAACAGGAACTCCTACACCGAACACTCCTAACAGCCAACTTCCACATCTGCAACCATTGCTAAGGTTCCTTCATGAAGAGTCTTATGGACTGAATCAGAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAAATGGAGGAAGGAAGGTCTCGTCTGTTACATCTACTTCACAAATGCATGATTAGTGCTAGAAAGGCAGATTTACAAAACATTCCACCATGCATCAAGAAAGTTGTTTATCTGGATTTTAAGGAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACAGTACGGCGTAATATATTGATGGCTGATTGGAATGATCCCTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAGTTTCGCCGGGCAACTATAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATATTAGTACAAAGTGGTCTGGATCCTACTTCTGGAGAGTATTCCTCCATAAGATGTAATCTCTTGTACGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGGTCATTACACCATGTTGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGATCACACAAAGTGTACTTATCCTGGCTGCAGTAAATTATATGAGATGCAAAGTAGACTTCCCCGACCTGAAAATCCTAATCCGAAGTGGCCAGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCGGATTGGCAATCTACATCTAGTACTAAAGTCTCCTATCTTGTCCAGAAGTTGAAAGCTTTGCAAGGAACCAATGAAGAGACCAGCTTCAGTAACAATGATGAGATGCCTATTGAGAATAGTTTCTCTCTGCATAGAGATGATAAATCAGCATTTCAGAAATGTTCGAAGAGCAGCACAAAGACCAATTTCAACCTCGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATAAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCTTTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCGCTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTCGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCACCGTATGGGTGCTTCTCGTCCTATTCACGTGGAAACACTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGGCTTTTTACAGGAAGCTGATAAATGTAGAAGATCGCCAATTAAGGATGTTGCTGAATCTGAAGATGATGGTGGGGGACGAGCATATAAATCATTGCATGATTTTGCGGAAAGCAGTTATCTATTGAAACTTAGATCTGTGTATACTAATTCAGAAAGTCCAGAAGGTTTGTTCATGGTGTTTTCCCCTAGATCTGTTGTTAGGAAATATGGATTCAGCAGAAAGATGAGTGACATCTTTCTTAACTGTGTTTTAATTGATCAACATCAAGCAAAAAGCCCTTTTATAGCCAAAGGGGTAGCCACGAATGTTGAGCGGAGCAGCACCTCACTATTAGGGTTGTTGCGAAGAAGGAGGAACGAGATCTGTGGTTTGAGACGTGCGAAGAGGAGCGAGATCTGTGGTCTGAGGCGTGTGGAGGAGTTCCAATTGGAAAAGCAAGGTGAATGCGTGCGTCCGAGTAGAGCTCTGTCAAAATCAAGATAG 4248 0.4327 MSSDTSFVDHKLCGFLCAVLTVSHRDSDPAFGERCEVFNDAGEVGFRSQTGVVLSPVLNSSQCGGGSKTKRTHSVGMVNGSMSVVHQLHAMVTRKCMRIDARVVCVEAPRVVLLVDVYLPIHVWSGWQFPRSGAVAAAVFRHLSCDWDERSSMLSYPDYCRKTHGANESIWNLSDCHVLCCKLHSHVSSSSRKRLFELHELFKTLPGVGKQRMFNSSKIIPMDHSSRSGIWEISDDILTKILSSLDPMDLTRVSETCHHLRSLAASVMPCTKLNLFPHQRAAVEWMLHRERNAELLPHPLYAVLSTEDGLSFHVNTVSGEIVTGEAPTIRDFRGGMFCDEPGLGKTVTTLSLIMKTRGTLADPPDGAQVVWCKHNGNQKCGYYEISGNNITGCSTLGKRDVSQHISRTSDNHDYSSKRARMSNPDQQITKLQGSCSMEVKKSPVKACFKESMHSNQYTRSLSRIKKNLCFTYEDEAMISKEREIGEGLIEAKHASDVTPHVSQKKLPGKPEGDLFEYNDTWIQCDACHKWRKLADNSMASSSAAWFCSMNTDPLYESCSVPEQHFHNTSKITHLPGFHLKGTHGGERQNVSFFTSVLKEHHSLINSQTRRALTWLAKISTDKLAGMETNGIRGPFLNTCTASSRHFNAFHKVFQAFGLLKRVDKGVCKWFYPQHLNNLTFDVTALGMALREPIDFVRLYMSRATLVVVPANLVDHWKTQIEKHVRPGQLRIYVWTDHRKPSLHCLAWDYDVVLTTFSRLSAEWGPRKKSVLMQVHWFRVILDEGHTLGSSLNLTNKLQMAISLTASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKADLQNIPPCIKKVVYLDFKEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDILVQSGLDPTSGEYSSIRCNLLYGGHCVRCKEWCRLPVITPCWHLLCLDCVSIDHTKCTYPGCSKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSTKVSYLVQKLKALQGTNEETSFSNNDEMPIENSFSLHRDDKSAFQKCSKSSTKTNFNLEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLGFLQEADKCRRSPIKDVAESEDDGGGRAYKSLHDFAESSYLLKLRSVYTNSESPEGLFMVFSPRSVVRKYGFSRKMSDIFLNCVLIDQHQAKSPFIAKGVATNVERSSTSLLGLLRRRRNEICGLRRAKRSEICGLRRVEEFQLEKQGECVRPSRALSKSR 1415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00275 1415 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1129 1279 IPR001650 -
Phco10g00275 1415 SMART ultradead3 271 844 IPR014001 -
Phco10g00275 1415 ProSitePatterns Zinc finger RING-type signature. 1011 1020 IPR017907 -
Phco10g00275 1415 CDD F-box_SF 232 264 - -
Phco10g00275 1415 ProSiteProfiles Zinc finger CW-type profile. 515 566 IPR011124 GO:0008270
Phco10g00275 1415 Pfam SNF2-related domain 278 919 IPR000330 GO:0005524|GO:0140658
Phco10g00275 1415 CDD SF2_C_SNF 1138 1243 - -
Phco10g00275 1415 Pfam CW-type Zinc Finger 520 563 IPR011124 GO:0008270
Phco10g00275 1415 Pfam F-box domain 233 267 IPR001810 GO:0005515
Phco10g00275 1415 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 668 833 IPR014001 -
Phco10g00275 1415 SMART fbox_2 233 273 IPR001810 GO:0005515
Phco10g00275 1415 Pfam Helicase conserved C-terminal domain 1136 1233 IPR001650 -
Phco10g00275 1415 SUPERFAMILY F-box domain 223 266 IPR036047 GO:0005515
Phco10g00275 1415 CDD DEXDc_SHPRH-like 697 874 - -
Phco10g00275 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 357 IPR027417 -
Phco10g00275 1415 SMART helicmild6 1151 1233 IPR001650 -
Phco10g00275 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 775 1273 IPR027417 -
Phco10g00275 1415 Gene3D - 1056 1297 IPR027417 -
Phco10g00275 1415 MobiDBLite consensus disorder prediction 406 425 - -
Phco10g00275 1415 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 81 1260 - -
Phco10g00275 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 872 IPR027417 -
Phco10g00275 1415 Gene3D - 681 877 IPR038718 -
Phco10g00275 1415 Gene3D - 515 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00275 Phco-Chr10 2541044 2552419 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco10g00275 SNF2_N 6.6e-99 CL0023