Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00268 ATGTTAGGCCTCAGAGACCTAGTTCTCATAGCTCAAACCCCTTCCCTGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAAGGCCAACAACAACCCATCTCAGAAAACCAAACTCCCAACCTTCCTCTGCCTTCTTCAGCCGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCGCACCAAAGCAATGAGATTCAAGAGTGTGGTGCTGCTGCTGGTGGCGGTGGCGGTGGAGGTACCACCACCACCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATCCTCCAAAGAAGGGTGTGATGAACATGGATGATGACGATGAAGATGATGAGAGACATCATCACCATAAGGGTGTGATGGAGAGTGAGGAAAACGGGATTTATGGACCTGACTTTAGGGTGTGTCAAGATTGTGGCAACAGGGCCAAAAAAGATTGCATCTTTAGGAGATGCAGGACTTGTTGCAAGGGACGTGGATATGATTGCAACACTCACGTGAAGAGCACATGGATCCCCTCAATTCGCCGCCGGGAGCGGGACATGGTGGTGGCTTCCACCGGAGGAGGTGGTGGTGGTGGTGGCAGTAAGAGGCCAAGAGCCATAGTGGGGTCATCTCAAAATGCCACTGCCACTTCTCACAGTTCCAACTCTAATGCTACAACACCTAAGAGCTTAGCTACAATCTCTTCTCACCAAGATGGGAGCTTCAAAGAGTCTTTACCAGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCAACGGTGCACATCAGTGGTCATGTGTTCAAGGGGTTTCTGTATGACCATGGAGTTGATGGGAAAATTGCAAATGCAGTGCCTTGTGTTTCGGAACTGCAACTGGGAAACAATTGCAGTGGGAAGAACAGAGAATGTTCTTCTGCAATTGGACTTCCAAATAACAATGCATATCCTGCTTCTGCCACCTGA 1029 0.5024 MLGLRDLVLIAQTPSLHQHQHQHQHQHQGQQQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQSNEIQECGAAAGGGGGGGTTTTNYWNLKMCPEVNPPKKGVMNMDDDDEDDERHHHHKGVMESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWIPSIRRRERDMVVASTGGGGGGGGSKRPRAIVGSSQNATATSHSSNSNATTPKSLATISSHQDGSFKESLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKIANAVPCVSELQLGNNCSGKNRECSSAIGLPNNNAYPASAT 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00268 342 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 17 328 IPR007818 GO:0003700|GO:0006355
Phco10g00268 342 Pfam Domain of unknown function (DUF702) 145 299 - -
Phco10g00268 342 MobiDBLite consensus disorder prediction 15 46 - -
Phco10g00268 342 NCBIfam putative zinc finger domain, LRP1 type 145 187 IPR006510 -
Phco10g00268 342 NCBIfam LRP1 C-terminal domain 251 298 IPR006511 -
Phco10g00268 342 MobiDBLite consensus disorder prediction 196 236 - -
Phco10g00268 342 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00268 Phco-Chr10 2440278 2441570 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phco10g00268 DUF702 2.7e-54 No_clan