Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00259 ATGAAGTTTCACAAACCCGCCTCACGCAGCACCCTTCGCGCGCTCCCTGAAAACCCTAATCTTTGCGTTCAAGCTTTTCAATCTCCAATAGTTAGCTTCATCTCTTCACCAAAGGAAATGGGTGAAGCCATGGAAGCCGAAGAAAGGCCCAAATTCAGAGATATCAGACGCTATTTCTGCGAGTTCTGCGGTATCTGCAGGTCCAAGAAAACCCTCATCACCTCTCACGTGAATTCACACCACAAGGAGGAGGTCGAAAAGGCAAGAGCTGAAAGGGAAAGAGAACCCGAAGCTGAGGCTGTGAAATCCAACACGTGCGGGGAATGTGGTGCCAGTTTCAAAAAACATGCTTATTTGTTGCAGCACATGCAAAGTCATTCGCTTGAGAGGTCGTATGTGTGTGTTGTGGATGATTGTCAGGCAAGTTACCGAAGGAAGGATCACCTGAGTCGTCACCTTTTGCAGCATCAAGGGAAGACTTTTAAATGCCCTGTTGAGAATTGCAGCACCGAATTCTCTTTGCAAAGCAATGTGAAACGACATGTTGAGGAGGTCCATGATGACAGTTCTACCTCTACATGTGACAAAAGTCACAAGCAGCACACATGTCCAGAAATTGGTTGTGGAAAGGTTTTCAAATTTGCATCACAGCTACGAAAACATGAAGATTCTCATGTTAAGCTGGAGTCATTAGATGTGGTGTGCTTAGAGCCTGGTTGCATGAAGCATTTCACTAATGTCCAGTGCCTTCAAGCCCATGTAAAGTCCTCCCATCAATATATGACCTGTGAAACTTGTGGTACTAAGCAACTAAAGAAGAATATTAAGCGTCACCTTCGTACACATGAACCTCTCAGTTCACCAGAGACCTTTCGATGTGAGTTCAAGGGTTGCAGCTGCACATTTTCAAGAAAATCTAATCTTGATAAGCATAAGAAGGTTGTTCACTTTAAGGAAAAGCCTTTTGTGTGTGGGTATGCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGAGATAACCATGAGAAAACCGCAAAACATGTTTTTACCCTTGGTGATTTTGAAAAGGCTGATGAAGAGTTCAGGTCAAGATCTAGGGGAGGAAGGAAGAGGAAATGTCCTACTGTTGAAATGCTAGTCAGGAACAGGGTTACCTCACCAAGTCAATTGGAGAGTTGGTTATTCATGGGGTATAGTGAGTAA 1206 0.4403 MKFHKPASRSTLRALPENPNLCVQAFQSPIVSFISSPKEMGEAMEAEERPKFRDIRRYFCEFCGICRSKKTLITSHVNSHHKEEVEKARAEREREPEAEAVKSNTCGECGASFKKHAYLLQHMQSHSLERSYVCVVDDCQASYRRKDHLSRHLLQHQGKTFKCPVENCSTEFSLQSNVKRHVEEVHDDSSTSTCDKSHKQHTCPEIGCGKVFKFASQLRKHEDSHVKLESLDVVCLEPGCMKHFTNVQCLQAHVKSSHQYMTCETCGTKQLKKNIKRHLRTHEPLSSPETFRCEFKGCSCTFSRKSNLDKHKKVVHFKEKPFVCGYADCGMRFAYKHVRDNHEKTAKHVFTLGDFEKADEEFRSRSRGGRKRKCPTVEMLVRNRVTSPSQLESWLFMGYSE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00259 401 Pfam Zinc finger, C2H2 type 201 225 IPR013087 -
Phco10g00259 401 Pfam Zinc finger, C2H2 type 291 316 IPR013087 -
Phco10g00259 401 Pfam Zinc finger, C2H2 type 105 126 IPR013087 -
Phco10g00259 401 Pfam Zinc finger, C2H2 type 132 156 IPR013087 -
Phco10g00259 401 ProSitePatterns Zinc finger C2H2 type domain signature. 163 186 IPR013087 -
Phco10g00259 401 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Phco10g00259 401 Gene3D Classic Zinc Finger 128 159 - -
Phco10g00259 401 ProSitePatterns Zinc finger C2H2 type domain signature. 203 225 IPR013087 -
Phco10g00259 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Phco10g00259 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 230 IPR013087 -
Phco10g00259 401 ProSitePatterns Zinc finger C2H2 type domain signature. 134 156 IPR013087 -
Phco10g00259 401 Gene3D Classic Zinc Finger 196 283 - -
Phco10g00259 401 Gene3D Classic Zinc Finger 286 375 - -
Phco10g00259 401 ProSitePatterns Zinc finger C2H2 type domain signature. 293 316 IPR013087 -
Phco10g00259 401 SMART c2h2final6 104 126 IPR013087 -
Phco10g00259 401 SMART c2h2final6 132 156 IPR013087 -
Phco10g00259 401 SMART c2h2final6 261 282 IPR013087 -
Phco10g00259 401 SMART c2h2final6 233 258 IPR013087 -
Phco10g00259 401 SMART c2h2final6 291 316 IPR013087 -
Phco10g00259 401 SMART c2h2final6 161 186 IPR013087 -
Phco10g00259 401 SMART c2h2final6 322 348 IPR013087 -
Phco10g00259 401 SMART c2h2final6 58 80 IPR013087 -
Phco10g00259 401 SMART c2h2final6 201 225 IPR013087 -
Phco10g00259 401 ProSitePatterns Zinc finger C2H2 type domain signature. 324 348 IPR013087 -
Phco10g00259 401 Gene3D Classic Zinc Finger 34 127 - -
Phco10g00259 401 Gene3D Classic Zinc Finger 160 187 - -
Phco10g00259 401 SUPERFAMILY beta-beta-alpha zinc fingers 142 199 IPR036236 -
Phco10g00259 401 ProSitePatterns Zinc finger C2H2 type domain signature. 235 258 IPR013087 -
Phco10g00259 401 SUPERFAMILY beta-beta-alpha zinc fingers 103 156 IPR036236 -
Phco10g00259 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 291 321 IPR013087 -
Phco10g00259 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 161 IPR013087 -
Phco10g00259 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 191 IPR013087 -
Phco10g00259 401 PANTHER ZINC FINGER PROTEIN 41 389 - -
Phco10g00259 401 SUPERFAMILY beta-beta-alpha zinc fingers 272 330 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00259 Phco-Chr10 2362177 2366083 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco10g00259 zf-C2H2 0.011 CL0361