Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00254 ATGAAAATCCCGTGTTGTTCGGTTTGCCAAACGCGGTACAACGAGGAGGAGAGAGTTCCGCTTCTGCTCCAATGCGGCCACGGTTTCTGCAGAGACTGTCTCTCTAGAATGTTCGCGGCGTCTTCGGACGCCACGCTGGCGTGTCCGAGGTGCCGACACGTGTCCACCGTGGGGAACTCCGTGCAGGCGCTGCGGAAGAACTACGCGGTGCTCGCGCTGCTCCACTCCACCACTACCGCCGCCAACGGCGGCGGTGGAGGAGGTGGAGGGGCGAATTTTGACTGCGACTACACCGACGAGGAGGAGGAGGAGGAGGACGGAGGAAGGGAGGAGGACGAGGACGACGAGAAGCGGCGACGGAACAGCCGCGAGTCGCAGGCGTCGAGCTCTGGCGGGTGCGAGCCGGTGATCGAGGTTGGCGGCGGCGCGCACCAGGACCTGAAGTTGGTGCGGCGGATTGGGGAGGGGAGGAGGGCGGGAGTGGAGATGTGGATGGCGGTGATCGGCGGTGGAGGGGAGGGAGGAAGGCGGTGTCGGCACAGCGTGGCGGTGAAGAAGGTGGCGGTGGTGGAGGGGATGGATTTGGATTGGGTTCAGGGAAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTGTGCACTTTCCATGGGACAATGAGGGTGGAGGACAGTTTGTGCCTCGTGATGGATAAGTGCTATGGATCGGTTCAGTCCGAGATGCAGCGCAATGAGGGAAGGCTCACTTTGGAACAAGTGCTAAGATACGGGGCTGACATTGCCCGAGGGGTTGTTGAGCTTCATGCTGCAGGTGTTGTTTGCATGAATTTAAAACCATCCAATCTTCTTCTTGACGCAAATGGTCACGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCGCGACCAGAGTGTGATTCTGCAAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACGGCACCGGAGGCTTGGGAACCTGTGAAGAAATCGTTAAATTTGTTTTGGGATGATGGAATAGGTATATCTTCAGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTTCCATTCCTTGGGCAGGTTTAAGTGCAGAGGAAATTTATCGAGCTGTTGTTAAAGCTAAGAAACTGCCTCCACAGTATGCTAGTGTGGTTGGAGGTGGAATCCCAAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCAATGCTGGCAATATTTCTCCGTCATTTGCAGGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGGCTTAGATAATAAGGGCTCTGTATCAACTGTGATGGAGCCTTCACCAGTACCTGAATTGGAAGTTCCTCAGGAAAACCCTAACCAACTTCATCGACTTGTGTCTGAAGGAGATACTCCAGGTGTTAGAGATCTTCTTGCAAAGGCTGGATTAGAAAATGGCAGCAACTACCTATCTTCATTATTGGAAGCTGAAAATGCCGATGGACAAACAGCTCTCCACTTAGCTTGTAGACGGGGCAGTGCAGAACTTGTCGAGACAATTTTGGAGTATAGAGAAGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGGTCCCCAGAATGTGTTCGTAGCCTTATCAAAAGAAATGCTAATGTGCAGTCAAGATTGAGAGATGGTTTTGGTCCATCTGTAGCTCACGTTTGTGCCTATCATGGCCAGCCAGATTGTATGCGAGAATTACTATTAGCTGGAGCTGATCCTAATGCAGTGGATGATGAAGGTGAATCTGTTCTGCATAGAGCAATTTCCAAGAAGTACACAGACTGTGCACTTGTAATATTGGAGAATGGAGGATGTAAATCAATGGCCATCGTGAATTCAAAGAACTTGACGTGA 1992 0.51 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRDCLSRMFAASSDATLACPRCRHVSTVGNSVQALRKNYAVLALLHSTTTAANGGGGGGGGANFDCDYTDEEEEEEDGGREEDEDDEKRRRNSRESQASSSGGCEPVIEVGGGAHQDLKLVRRIGEGRRAGVEMWMAVIGGGGEGGRRCRHSVAVKKVAVVEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEDSLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSAKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNGLDNKGSVSTVMEPSPVPELEVPQENPNQLHRLVSEGDTPGVRDLLAKAGLENGSNYLSSLLEAENADGQTALHLACRRGSAELVETILEYREANVDVLDKDGDPPLVFALAAGSPECVRSLIKRNANVQSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAISKKYTDCALVILENGGCKSMAIVNSKNLT 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00254 663 ProSiteProfiles Protein kinase domain profile. 147 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00254 663 FunFam E3 ubiquitin-protein ligase KEG 2 81 - -
Phco10g00254 663 ProSiteProfiles Ankyrin repeat region circular profile. 523 545 - -
Phco10g00254 663 SMART ANK_2a 523 553 IPR002110 GO:0005515
Phco10g00254 663 SMART ANK_2a 557 586 IPR002110 GO:0005515
Phco10g00254 663 SMART ANK_2a 592 621 IPR002110 GO:0005515
Phco10g00254 663 SMART ANK_2a 625 656 IPR002110 GO:0005515
Phco10g00254 663 FunFam E3 ubiquitin-protein ligase KEG 236 452 - -
Phco10g00254 663 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Phco10g00254 663 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Phco10g00254 663 Pfam RING-type zinc-finger 6 49 IPR027370 -
Phco10g00254 663 MobiDBLite consensus disorder prediction 95 111 - -
Phco10g00254 663 MobiDBLite consensus disorder prediction 91 139 - -
Phco10g00254 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Phco10g00254 663 Gene3D - 471 661 IPR036770 -
Phco10g00254 663 Pfam Ankyrin repeats (many copies) 595 642 IPR002110 GO:0005515
Phco10g00254 663 PRINTS Ankyrin repeat signature 608 622 IPR002110 GO:0005515
Phco10g00254 663 PRINTS Ankyrin repeat signature 524 539 IPR002110 GO:0005515
Phco10g00254 663 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 663 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Phco10g00254 663 SUPERFAMILY Protein kinase-like (PK-like) 141 451 IPR011009 -
Phco10g00254 663 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Phco10g00254 663 CDD RING-HC_KEG-like 3 59 - -
Phco10g00254 663 Pfam Ankyrin repeats (3 copies) 486 585 IPR002110 GO:0005515
Phco10g00254 663 Gene3D Transferase(Phosphotransferase) domain 1 235 456 - -
Phco10g00254 663 SUPERFAMILY Ankyrin repeat 485 648 IPR036770 -
Phco10g00254 663 SUPERFAMILY RING/U-box 5 61 - -
Phco10g00254 663 SMART ring_2 6 51 IPR001841 -
Phco10g00254 663 Pfam Protein kinase domain 179 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00254 663 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Phco10g00254 663 MobiDBLite consensus disorder prediction 447 491 - -
Phco10g00254 663 ProSiteProfiles Ankyrin repeat profile. 523 556 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00254 Phco-Chr10 2337348 2340501 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Phco10g00254 Pkinase 1.2e-29 CL0016