Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00231 ATGGCCGAAATTTCTTCTCCTGCAATTGACACTCAGGACACACTTCCACTCCCATCAATTCTTAATGTCCTTGTCATTGACACTGACCTCAGTGTTCTTGAATACATCAAGCATGCATGCCCCCACTCTTCCTATCAAGTTATACCAAGCTCTGAATCTCTGTTTGCTGCCAATCTTTTGCGGGAAAGAAAGGAGATTATTCATTTGATACTCATTGAGGTTCATATGCCATTGATGGATGGCTATGAATTCATGCAATTTCTTAACCAAGAACAAATTAATGTTCCTCTCATCATGATGTCCACGGATAATAGTAGGGCTTCCATAACGAAGGCCTTTGAAGTTGGAGCTTGTGATTATTGGATCAAACCCTTGTATGAGGATCAGGTGGTGAATATGTGGACACATGTGGCGAGGAACAGCATGAGAAAAGATGAGAAGCAAAAAGATATTGGTAGCCAGAAAGATGATGACATAACAAGAGTGATTGTTGATTCTGATGATGATTTTGATGTTGATGATGATGAATCTTACAATACTGATAATGCACAATGGTCAACAGAACTGGATCTTATGTTTCACTACGCTATCATGAAAATTGGATTGGAAATGGCCGAGCCCAAGAAAATTCTTGAAGCTATGAACGTGCCAGGTTTGGAAATAGAAGATGTTGCAAGTCATCTGGAGGATTACATTGTAAGAATGGAAGGAGAGGGAAAGGTATCAGCAGAAAATGAGCAACAAAGCAGGTTCAAAAGAATATGTGTTTTCTGTGGTAGTAGAGCTGGATACAAGTCTGCATTCAGTGATGCAGCTCTTGAGCTTGGCAAATTCATGGTTGAAAGGAGAATTGATCTGGTTTATGGAGGAGGAAGCTTAGGATTAATGGGTTTGATCTCTCAGACTGTGCTAAATGGAGGTTGCCATGTTCTTGGAGTGATTCCAGAAACTCTTTTGCCTCGTGAGGTGTCTGGAGAGACCTTTGGAGAAGTGAAATCAGTTGCAGACATGCATGAAAGGAAGTCAACCATGTTTGAACATGGTGATGCATTCATAGCACTTCCTGGAGGCTATGGAACCATGGAAGAGGTGCTAGAAGTCATAGCCTGGTCTCAACTAGGAATACATGACAAACCAGTGGGGTTGTTGAATGTGGAAGGATATTTCAATGGGTTGTTAAAGCTATTTGATAAGGGAGTTGAAGATGGTTTCATAGACAAGTCTGCAAGGCATATTATGCTCATAGGAGACACACCAGGAGAACTCATAAACAAAATGGAGGAATATGTTGCAAATAAAGTTGGAAGAGTGGAGCAATTATGA 1323 0.4074 MAEISSPAIDTQDTLPLPSILNVLVIDTDLSVLEYIKHACPHSSYQVIPSSESLFAANLLRERKEIIHLILIEVHMPLMDGYEFMQFLNQEQINVPLIMMSTDNSRASITKAFEVGACDYWIKPLYEDQVVNMWTHVARNSMRKDEKQKDIGSQKDDDITRVIVDSDDDFDVDDDESYNTDNAQWSTELDLMFHYAIMKIGLEMAEPKKILEAMNVPGLEIEDVASHLEDYIVRMEGEGKVSAENEQQSRFKRICVFCGSRAGYKSAFSDAALELGKFMVERRIDLVYGGGSLGLMGLISQTVLNGGCHVLGVIPETLLPREVSGETFGEVKSVADMHERKSTMFEHGDAFIALPGGYGTMEEVLEVIAWSQLGIHDKPVGLLNVEGYFNGLLKLFDKGVEDGFIDKSARHIMLIGDTPGELINKMEEYVANKVGRVEQL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00231 440 PANTHER LOG FAMILY PROTEIN YJL055W 245 433 - -
Phco10g00231 440 Pfam Response regulator receiver domain 23 132 IPR001789 GO:0000160
Phco10g00231 440 NCBIfam Rossman fold protein, TIGR00730 family 252 429 IPR005269 GO:0009691|GO:0016787
Phco10g00231 440 Gene3D - 240 428 - -
Phco10g00231 440 Gene3D - 19 157 - -
Phco10g00231 440 SUPERFAMILY CheY-like 21 148 IPR011006 -
Phco10g00231 440 ProSiteProfiles Response regulatory domain profile. 22 138 IPR001789 GO:0000160
Phco10g00231 440 SMART REC_2 21 134 IPR001789 GO:0000160
Phco10g00231 440 NCBIfam myb-like DNA-binding domain, SHAQKYF class 183 231 IPR006447 GO:0003677
Phco10g00231 440 SUPERFAMILY Homeodomain-like 181 236 IPR009057 -
Phco10g00231 440 Gene3D - 179 236 - -
Phco10g00231 440 Pfam Possible lysine decarboxylase 296 426 IPR031100 -
Phco10g00231 440 SUPERFAMILY MCP/YpsA-like 250 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00231 Phco-Chr10 1978017 1982009 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco10g00231 Lysine_decarbox 1.4e-39 CL0349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02030 2 51002831 51006723 Phco10g00231 10 1978017 1982009 ECH
Phco10g00231 10 1978017 1982009 Phco10g00231 10 1978017 1982009 ECH