Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00208 ATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTTTATTCTCACCACTCTTCTTTCACTTCTCAACCAAACCATTTCTCTTCCTACCCTCTTTCCTACTCAAACACCACCAACACCTTCTCCCTTGTTCAATCCGAAACCTCCTCCTCATCATGTGCAGCTCCTCCTTCTCCTCCGCTCAGAGAAGCCCTTCCTCTCATAAGCCTCATAAAGCAGAAGGAGAATAAGACCTCCAACGGTGGTGGCGAAGCTGAAGAGGAAGGGCACAATAAAAGAGACATGGATGAGACCCTTTTGACTGAAGATGGTGATGATGAAACTGTGGCAGTAGCACTGCACATAGGGCTACCTAGCGTGGATGCTTCTGATCTTCTGGGATCGGGGAAGATCTCAGCTTGTGCACAAATAGGTGACAAAGGGGAAGTGAGTGTGATTTCTGGACACCCTTTGGACAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCCCAGATTCTTATTGGTCCTACTCAGTTCTTATGTTCTGTGTGCTCCAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGTATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAGGGTGATTGGAGGACACATGAGAAGAACTGTGGGAAAATATGGTACTGTTTATGTGGGTCTGATTTTAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGTCATGGCCACGGAGCTGTTGACATTGATTGCATGCAGGAAGATGAAGCTGCCTCCGAAATTGAACACGATGGGGATAGCTCAATGTGA 1020 0.4471 MTDPHSNLYAGTFNFMPLYSHHSSFTSQPNHFSSYPLSYSNTTNTFSLVQSETSSSSCAAPPSPPLREALPLISLIKQKENKTSNGGGEAEEEGHNKRDMDETLLTEDGDDETVAVALHIGLPSVDASDLLGSGKISACAQIGDKGEVSVISGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEIEHDGDSSM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00208 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Phco10g00208 339 Gene3D Classic Zinc Finger 232 319 - -
Phco10g00208 339 Pfam C2H2-type zinc finger 179 198 - -
Phco10g00208 339 FunFam Zinc finger protein WIP2 232 314 - -
Phco10g00208 339 SUPERFAMILY beta-beta-alpha zinc fingers 172 201 IPR036236 -
Phco10g00208 339 SUPERFAMILY beta-beta-alpha zinc fingers 247 283 IPR036236 -
Phco10g00208 339 MobiDBLite consensus disorder prediction 78 99 - -
Phco10g00208 339 Gene3D Classic Zinc Finger 178 201 - -
Phco10g00208 339 SMART c2h2final6 289 312 IPR013087 -
Phco10g00208 339 SMART c2h2final6 263 283 IPR013087 -
Phco10g00208 339 SMART c2h2final6 179 201 IPR013087 -
Phco10g00208 339 MobiDBLite consensus disorder prediction 84 99 - -
Phco10g00208 339 PANTHER ZINC FINGER PROTEIN WIP2 35 332 IPR043584 GO:0003700|GO:0010468
Phco10g00208 339 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00208 Phco-Chr10 1716110 1718013 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco10g00208 zf-C2H2_6 2e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00208 10 1716110 1718013 Phco10g00208 10 1716110 1718013 ECH