LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco10g00204	ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCAGTGTAATTTTGTTCATGAGAGAAAGGATGATGATAGTGGTCATATTTGTTGCTTTCATAGAAAAGGAGTATGTGCTTATGGTAGTAGATGCAGATATAAACATGTCAGAGCTTCTGATGCGTCGTCTTCATCAAACAGACGTCATCCTCCTCTTTCGGAATCTGTGCTGAATCCTACCACCAAACCAACAAGTTGGGTTCCAAAGGGTTCAAAGTCATCTTCATCAGACAATTGTGCAAGGAGTTCACAACATAAGAATGATGTTGGTCAATCCAGTTCTAGTAGTGCTGCACCATCTGAAATTTTGTTCTGCTCATTTGCTGCTGCCGACTGCCCCCTTGGGAATAAATGTTCTCGTGTTCATGGAAATCGATGTTTATACTGTAGAAAATTTTGCTTACATCCTACTGACAGAGAGGAAAGAGAAAATCATTTGGGAACTTGTGAGAAAAAGGAAAAATACCTTCTGGCTTTGAATGACAGTCAAGAAGTAGAATGCAATGTTTGTTTGGAGCGTGTTCTTTCCAAGGCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTGAATGTGATCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAGTAGTGCCCCAACCTCTGGAATGGACATGGGTAGTAGTAGTGGCACTGCTAATGCAGTGAGAACATGTCCTGTTTGTCGCAAACTGTCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAAGAAATTATTGATAACTACAAGGCAAACTGCAAACTAATTAATTGCAAGCATTTTAACTTCGGAAATGGGAATTGTCCATTTGGGGCTAGTTGCTTCTACAAGCACACTGTGAAGCCTGGCTCATACACATGGATCCATTGCAGGCCACCACCACAGCGGAGACAAAACAACATTACGATGAATGACATGTTGGAGATGCTCAGCGATGTTGATTTAACAAGTTCTATCATGAGGGACTCAGGGTTTTTCGATGATATGGATTCATTTGGGATGATGGATATATCTGATAGCCTTGGTGGTGAATCAGGTCCTTGTTTTGGCCCTTTTGATTCTGATGAAGAAGACACAGATTTTTTTCAGATGGCTGCATTGTCAGAGGCACTGGTTTCTGGCGTGGATGATTTTGGTCCTGAAGATTTTGTGGATGAAGAGTTCAACCCTATGGAGGCTGCCTTGTTATCAATGATGATGCATTCTAATATAGATGATGATGATGATGATGAAGAGGAATACAGTGATGAGTTCTACTAG	1338	0.4111	MSNRVCKFYARGACLKGDQCNFVHERKDDDSGHICCFHRKGVCAYGSRCRYKHVRASDASSSSNRRHPPLSESVLNPTTKPTSWVPKGSKSSSSDNCARSSQHKNDVGQSSSSSAAPSEILFCSFAAADCPLGNKCSRVHGNRCLYCRKFCLHPTDREERENHLGTCEKKEKYLLALNDSQEVECNVCLERVLSKAKPSDCKFGLLPECDHAFCLSCIRNWRSSAPTSGMDMGSSSGTANAVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLINCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHCRPPPQRRQNNITMNDMLEMLSDVDLTSSIMRDSGFFDDMDSFGMMDISDSLGGESGPCFGPFDSDEEDTDFFQMAALSEALVSGVDDFGPEDFVDEEFNPMEAALLSMMMHSNIDDDDDDEEEYSDEFY	445

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco10g00204	445	Pfam	Zinc finger, C3HC4 type (RING finger)	185	248	IPR018957	GO:0046872
	Phco10g00204	445	ProSiteProfiles	Zinc finger C3H1-type profile.	278	307	IPR000571	GO:0046872
	Phco10g00204	445	ProSiteProfiles	Zinc finger RING-type profile.	185	249	IPR001841	-
	Phco10g00204	445	Gene3D	-	1	66	-	-
	Phco10g00204	445	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	162	281	IPR013083	-
	Phco10g00204	445	CDD	RING-HC_MKRN	183	249	-	-
	Phco10g00204	445	ProSiteProfiles	Zinc finger C3H1-type profile.	1	27	IPR000571	GO:0046872
	Phco10g00204	445	MobiDBLite	consensus disorder prediction	59	113	-	-
	Phco10g00204	445	SUPERFAMILY	CCCH zinc finger	3	25	IPR036855	GO:0046872
	Phco10g00204	445	ProSiteProfiles	Zinc finger C3H1-type profile.	34	56	IPR000571	GO:0046872
	Phco10g00204	445	SMART	c3hfinal6	30	55	IPR000571	GO:0046872
	Phco10g00204	445	SMART	c3hfinal6	278	306	IPR000571	GO:0046872
	Phco10g00204	445	SMART	c3hfinal6	2	26	IPR000571	GO:0046872
	Phco10g00204	445	SMART	ring_2	185	248	IPR001841	-
	Phco10g00204	445	SUPERFAMILY	RING/U-box	178	255	-	-
	Phco10g00204	445	PANTHER	MAKORIN-RELATED	1	359	IPR045072	GO:0000209\|GO:0061630
	Phco10g00204	445	ProSitePatterns	Zinc finger RING-type signature.	209	218	IPR017907	-
	Phco10g00204	445	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	4	24	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco10g00204	Phco-Chr10	1689587	1696349	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Phco10g00204		zf-C3HC4	7.4e-07	CL0229

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco10g00204	10	1689587	1696349	Phco10g00204	10	1689587	1696349	ECH