Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00203 ATGTGGGCCTTTTCTCTCTCGTTTGTTATACAACTTGAAGATTATTATAATTTTTGTAATTTCTTGTCTTCTGAATCTTGTAGGGTTCTCTGTAAGTTCTTTGCTCATGGAGCCTGTCTGAAAGGAGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGCCGCTGCAGATATGATCACATCAAAGCTTCTCAAGCGCAAACTTCCATTCCATCTTCTTCAGTAATTGAACATCATACGCTGGTTTCAGATACTGGTGCTTTTGGAAATATTATAACTACTTCAAATGGTGTTGGTACAGCTGCAGAGTTTTCTCTTTCCAGTGCTCCGTACATTCTTCCTAGTGAACCGGCTTGGAATCATGAACTGGCTTGGAATCCAGAATTTGAGTATTATGAAATTTTAGGGGATGACAATGTTGGTCGATCCATAATCACTACGCCTTCTGAACTTTCAATTTGTTCATTTGCTGCTGCTGGCAACTGTCCACGAGGGGAAAAATGTCCTCATCTTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAGCATATGAAGAGTTGTGAAAATAAGCACAAGTATCTAGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTCTGCCTGGAGCGTGTTCTGTCAAAGCCTACAGCAGCCGAACGTAAGTTTGGGCTGCTATCTGAATGTGATCATCCATTTTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAATAGTACATTGAGGGCTTGTCCTATTTGTCGTAAGCTATCGTACTTTGTCATCCCAAGTGTCATTTGGTACTCGACAACTGAAGAGAAACAAGAAATCATTGACAACTACAAGGCCAAACTCAAGTCAATTGACTGCAAGCACTTTGACTTTGGGGATGGTAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTGTGGAGCAAGTAGTATTGCGACATCTAGGGGCTGCAGATGGAAATACCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCACTTAAGATGA 1164 0.4132 MWAFSLSFVIQLEDYYNFCNFLSSESCRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHIKASQAQTSIPSSSVIEHHTLVSDTGAFGNIITTSNGVGTAAEFSLSSAPYILPSEPAWNHELAWNPEFEYYEILGDDNVGRSIITTPSELSICSFAAAGNCPRGEKCPHLHGDLCPTCGKHCLHPFRPEEREEHMKSCENKHKYLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRVEQVVLRHLGAADGNTVIAKDIRLSDFLSNMHLR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00203 387 SMART ring_2 234 291 IPR001841 -
Phco10g00203 387 Pfam RNA-binding, Nab2-type zinc finger 170 189 - -
Phco10g00203 387 Pfam RNA-binding, Nab2-type zinc finger 326 348 - -
Phco10g00203 387 Pfam Zinc finger, C3HC4 type (RING finger) 234 291 IPR018957 GO:0046872
Phco10g00203 387 ProSiteProfiles Zinc finger C3H1-type profile. 321 350 IPR000571 GO:0046872
Phco10g00203 387 ProSiteProfiles Zinc finger C3H1-type profile. 53 80 IPR000571 GO:0046872
Phco10g00203 387 PANTHER MAKORIN-RELATED 29 370 IPR045072 GO:0000209|GO:0061630
Phco10g00203 387 SUPERFAMILY RING/U-box 223 298 - -
Phco10g00203 387 ProSitePatterns Zinc finger RING-type signature. 258 267 IPR017907 -
Phco10g00203 387 SMART c3hfinal6 54 79 IPR000571 GO:0046872
Phco10g00203 387 SMART c3hfinal6 26 51 IPR000571 GO:0046872
Phco10g00203 387 SMART c3hfinal6 166 191 IPR000571 GO:0046872
Phco10g00203 387 SMART c3hfinal6 321 349 IPR000571 GO:0046872
Phco10g00203 387 SUPERFAMILY CCCH zinc finger 56 77 IPR036855 GO:0046872
Phco10g00203 387 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Phco10g00203 387 ProSiteProfiles Zinc finger RING-type profile. 234 292 IPR001841 -
Phco10g00203 387 Pfam CCCH-type zinc finger 58 77 IPR041367 -
Phco10g00203 387 Pfam CCCH-type zinc finger 30 50 IPR041367 -
Phco10g00203 387 SUPERFAMILY CCCH zinc finger 27 50 IPR036855 GO:0046872
Phco10g00203 387 ProSiteProfiles Zinc finger C3H1-type profile. 165 192 IPR000571 GO:0046872
Phco10g00203 387 CDD RING-HC_MKRN 232 292 - -
Phco10g00203 387 Gene3D - 57 193 - -
Phco10g00203 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 309 IPR013083 -
Phco10g00203 387 Gene3D - 20 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00203 Phco-Chr10 1682390 1684509 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco10g00203 zf-C3HC4 3.3e-07 CL0229