Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00152 ATGGCATCCTCACATAATTTGGAAGATTATTCCTCTGAGGCCTCTGGCACCTCACAAGAAATTTGTCATACAAAAGAAGGAAAGAAGGTTGAGGTGACAACAATGAAGGAGAAAAGTATCAAATTTGAAGAAGGTCAGGTTTCCAATTCCAAAACTCATATGGTGTTAGATTTTGTTAAGTTTTCCAATGATCAATCAATTTGTGGGTCAAAAGTGGAATTGGATTTTTTCAATCCAACGAATGTCAGTGGTTCATCTTCTAGGACAAATCACAGTCAAGGAAAATATGAGAACAACAAAGAAGAGAAATCATCAGAGGCTAAGACTTTTTCTTGCAATTTTTGTCAGAAAGAGTTTTCTTCTTCACAGGCACTGGGAGGACACCAAAATGCCCATAAACAAGAAAGAGCTCTTGCAAAGCGTCGTCAAGGAATTGATGGTGGTGGTTTTGGGAACTCTCATATTCTCTATTATCCTTATGCCACACACTCCTTGTATGGATCTTATAATAGGGCACTTGGGATTCGAATGGACTCCACGATTCACAAACCTATATATCCTTCATCATCATTAGGTTTAAGGTTTGGTCAAGCATTTTCAAGGCAAGAGATGATAAACTCTTCTTCTCTTAGCTTACAGAAAAATACTGGAATTAGGATTATGGAAAGTGATACAACTTTGAGGAAACAAAATGATCATGGTACTAGTAGACACAATATTCCATTCTTTGAAGAGTCTTCTACAAATGTTACCAAATCAAATTTGACTTCATTGAATATAGAGGGTAATGATGATCACTCTAAGAAAGAAGAAATCTCAGATCCCACTTCTTCTTCTGATGAGATTGATTTATCACTTAAACTTTAG 867 0.3622 MASSHNLEDYSSEASGTSQEICHTKEGKKVEVTTMKEKSIKFEEGQVSNSKTHMVLDFVKFSNDQSICGSKVELDFFNPTNVSGSSSRTNHSQGKYENNKEEKSSEAKTFSCNFCQKEFSSSQALGGHQNAHKQERALAKRRQGIDGGGFGNSHILYYPYATHSLYGSYNRALGIRMDSTIHKPIYPSSSLGLRFGQAFSRQEMINSSSLSLQKNTGIRIMESDTTLRKQNDHGTSRHNIPFFEESSTNVTKSNLTSLNIEGNDDHSKKEEISDPTSSSDEIDLSLKL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00152 288 MobiDBLite consensus disorder prediction 1 21 - -
Phco10g00152 288 Gene3D Classic Zinc Finger 85 146 - -
Phco10g00152 288 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 288 IPR044246 GO:0009788
Phco10g00152 288 MobiDBLite consensus disorder prediction 227 288 - -
Phco10g00152 288 MobiDBLite consensus disorder prediction 240 261 - -
Phco10g00152 288 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Phco10g00152 288 MobiDBLite consensus disorder prediction 262 276 - -
Phco10g00152 288 MobiDBLite consensus disorder prediction 80 102 - -
Phco10g00152 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Phco10g00152 288 MobiDBLite consensus disorder prediction 1 25 - -
Phco10g00152 288 SUPERFAMILY beta-beta-alpha zinc fingers 107 137 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00152 Phco-Chr10 1223638 1224504 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco10g00152 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00152 10 1223638 1224504 Phco10g00152 10 1223638 1224504 ECH