Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00143 ATGGCAACAAGCATCCCAAGATTTGGCTTCATCATGACCCTTTTCACTATGGCAAGTGCACAATCTCTGAACTATGTGAATGATGACTGCCACAACTCAACAACAAAAGAACAAGCCCTAACCCTAACATTCCGAACCAACCTTAACAGCACCCTCTCAAGGCTCTCTTCTGATGCTGCAACAAGCAAGGGTTACAACCACACCACCACAGGAAATGGCAGCACACCGGTTGATGGTGCTGTGTATGGCCTCTATGACTGCAGGGGTGATGTGACAGGACCCTTCTGCCAGTTCTGTGTCTCCACTGCAGCCTCAGAGATTCTCCAGCAATGCCCCAACAGATCATCTGCTGTGATATGGTACAACTACTGCATTCTCAGGTACTCAAACCACAACTTCTTTGGGAACCTTACCACAACCCCATCATGGGAAATTGTGGAGCCCAAGAACACCACTGACCCAGAAGAGCTTCAGAAAGCTGAGAGCTACATGCAAAGCTTGAAGAGAGAAGCCACTGTGGAGACCAACAAGTTGTATGCAATGGGAGGGTTCAATTTGAGTGATGGTGAGGAAAGGTATGGGTTGGTGCAGTGCAGTAGGGACCTCACCAATGATGAGTGCAGCCAGTGTTTGGAGGCCATGATACAAAAAATTCCTCAGTGTTGTGGTACAAAGAGAGGATGGCAGGTTTTGGCTCCAAGTTGCCTTATAAAGTATGATGATTTCATGTTCTACCAGATTACAGATCAAACTTCTTCTCCTCTGCCTATTCCAGCTAAGAAGGGAGGTTCCATTGACTCAAAAACATTGATCATAATCATTGTGAGTGTATTGGTGGTACTGATTTTTCTTTGTTGCTCTATCTACTACTTGTGGAGGAAGTATCGGACAAATAAAGATGGATTGATATCAGTGAACACCCCCAGATCTTTTCATGGCCATGTTCAAAGAGAGGAACCACTGAATGCAGACCTTCCAACAATCCCTTTAATCTGGATTCAACAGAGCACTAATTACTTTTCAGAGTTGTCTAAATTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTAATTTAGAAGATGGAACAGAAGTTGCTGTCAAAAGACTCTCTAAAGCATCTGGTCAAGGTTTGGAGGAGTTCAAGAATGAAGTGATCTTCATAGCCAAACTGCAACATAGGAACCTTGTGAGACTCTTGGGGTGCTGCATTGAGGAAAATGAAAAGCTGCTTGTGTACGAGTACATGCCAAATTCTAGCCTTGACTCTCACCTGTTCAATGAGGAGAAAAGAAAGCAACTAGATTGGAATTTAAGACTGAGCATTATTAATGGAATTGCAAAAGGACTTCTGTATCTTCATGAAGACTCCAGACTTAGAATAATACATAGAGACCTAAAAGCCAGCAATGTACTTCTCGATCAAGAGATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAACATTTGAAAAAGGCCAGAGTCAAGAAAGTACAAGGAGAGTTATGGGCACCTATGGATACATGGCTCCAGAATATGCTATGGAAGGATTGTATTCAGTAAAATCTGATGTCTTCGGCTTTGGAGTTCTTCTGTTAGAAATCATATGTAGGAAAAGGAATAGTGGATTCCATCTTTCAGAACACGGTCAAAGCCTTCTTGTACATAGTTGGAGACTTTGGGGTGAAGGAAAAAGCTTGGAAATGTTAGATCCAATGCTGGAAAAGACATACAAAGCCAGTGAAGTTATGAAATGCATACACATTGGTTTGTTGTGTGTTCAAGAAGATGCAGCTGACAGACCAACCATGTCCACAGTTGTTGTCATGCTGGCAAGTGACACAATGGCCCTTCCCAACCCTAATCATCCTGCATTTTCAGTTGGAAGGAAGACCAAGGAAGAAGAATCAACATCAAAAGGATCCAAGGATCCTTCTATTAATGATGTAACAATATCAAACATTTTACCAAGGTAG 1977 0.4249 MATSIPRFGFIMTLFTMASAQSLNYVNDDCHNSTTKEQALTLTFRTNLNSTLSRLSSDAATSKGYNHTTTGNGSTPVDGAVYGLYDCRGDVTGPFCQFCVSTAASEILQQCPNRSSAVIWYNYCILRYSNHNFFGNLTTTPSWEIVEPKNTTDPEELQKAESYMQSLKREATVETNKLYAMGGFNLSDGEERYGLVQCSRDLTNDECSQCLEAMIQKIPQCCGTKRGWQVLAPSCLIKYDDFMFYQITDQTSSPLPIPAKKGGSIDSKTLIIIIVSVLVVLIFLCCSIYYLWRKYRTNKDGLISVNTPRSFHGHVQREEPLNADLPTIPLIWIQQSTNYFSELSKLGEGGFGPVYKGNLEDGTEVAVKRLSKASGQGLEEFKNEVIFIAKLQHRNLVRLLGCCIEENEKLLVYEYMPNSSLDSHLFNEEKRKQLDWNLRLSIINGIAKGLLYLHEDSRLRIIHRDLKASNVLLDQEMNPKISDFGLARTFEKGQSQESTRRVMGTYGYMAPEYAMEGLYSVKSDVFGFGVLLLEIICRKRNSGFHLSEHGQSLLVHSWRLWGEGKSLEMLDPMLEKTYKASEVMKCIHIGLLCVQEDAADRPTMSTVVVMLASDTMALPNPNHPAFSVGRKTKEEESTSKGSKDPSINDVTISNILPR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00143 658 Pfam Protein tyrosine and serine/threonine kinase 344 610 IPR001245 GO:0004672|GO:0006468
Phco10g00143 658 Gene3D - 141 244 IPR038408 -
Phco10g00143 658 Gene3D - 22 133 IPR038408 -
Phco10g00143 658 ProSiteProfiles Gnk2-homologous domain profile. 24 133 IPR002902 -
Phco10g00143 658 CDD STKc_IRAK 346 611 - -
Phco10g00143 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Phco10g00143 658 SUPERFAMILY Protein kinase-like (PK-like) 325 628 IPR011009 -
Phco10g00143 658 MobiDBLite consensus disorder prediction 643 658 - -
Phco10g00143 658 FunFam Cysteine-rich receptor-like protein kinase 28 26 132 - -
Phco10g00143 658 FunFam Liguleless narrow1 416 619 - -
Phco10g00143 658 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 654 - -
Phco10g00143 658 SMART serkin_6 340 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00143 658 ProSiteProfiles Protein kinase domain profile. 340 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00143 658 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Phco10g00143 658 Pfam Salt stress response/antifungal 159 240 IPR002902 -
Phco10g00143 658 Pfam Salt stress response/antifungal 30 130 IPR002902 -
Phco10g00143 658 FunFam Cysteine-rich receptor-like protein kinase 10 142 244 - -
Phco10g00143 658 Gene3D Transferase(Phosphotransferase) domain 1 416 620 - -
Phco10g00143 658 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 307 415 - -
Phco10g00143 658 MobiDBLite consensus disorder prediction 628 642 - -
Phco10g00143 658 MobiDBLite consensus disorder prediction 621 658 - -
Phco10g00143 658 Gene3D Phosphorylase Kinase; domain 1 305 415 - -
Phco10g00143 658 Pfam Domain of unknown function (DUF3403) 613 658 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00143 Phco-Chr10 1147196 1151644 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00143 PK_Tyr_Ser-Thr 2.4e-50 CL0016