Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00135 ATGACTGATCACCCTCTCTGCGGAGCAGGCTTTGATCTCATGTTCTTCTCTCTCTTCGCTCCGATCCTCTTCCAACCACGGGACGCGGTTTTCCTCCAGTTTTTAACTCAGATTTTAGATTTTAGCTTCAATACTCTCACGTCCTGTTTAGAGATGAGTCAAATGACACATGACATTGATGACAATGTGCATGGTGAGGATCAGACTGGGTCACAGTTGAACGATGAGGGTAATGGAGGAGGTGTTGTTCTGAAGAAAGGACCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATAAGCATGGAGAGGGGAATTGGAATGCTGTTCAGAAGTACTCAGGCCTTTCTCGTTGTGGAAAAAGTTGCCGTTTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAAGGCGCATTTACTGCAGAAGAGGAGCAGATGATTGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCGGCACATTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGGATGAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCTGAAATAGTTATGCAAGCATTTCAAGATAGTAAGCATGGCCAAGGTACTGGTGAAATCAATGATGGAGATGGATGCCACCATGATTTCATGGAGAGAAACAATTATGAGATACATGATGCAATATTTGACAGTCTGAAGGAAAATCAGGGAATCTTGCCTTTTGTGCCTGAGCTTTCTGATATTTCTGCTAATAGCATTCTGCCAAACGTTCTTGGTTCTCCTCCATACTGTAATTTCCTGCCATCGGCATTACCTAATCATGATCATCTTCAAGAGACATCAGTGTCTTTTATTGGTTCCAGTGAATTGAACACTAATGGATTTTATCCATTCAACCACTTTAAGGATAATGCTTCTGATAAGATTGCAGAATCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCATATGGCTCAATTTGTTACAGCCATTCATTATCGAATGACAATTACTCTACTTCTAAGCCGACTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGTTAGCTGGGGTACCTCTCCCCCGCCTCCATTGAATGAGTCTATTGATGTTTTAATTCATTCTCCCCAACCACCTTATGCACTAGACTCAGGTTCTTCACCACTCAGTTGTTGCTTCCTTAATGAATTTCTTTATCAGCAGGCGAAGGCTCTTAGTTATTCAAAGAATAATTGGTCTGACAAGAGTTCAAATTCATCCATTGCAACTCCCGTTGACAGAGCTGAGAGCTCGGCTTTGAATATGTACGAGACAGAGTGGGAGGATTACGCTGACCCTGTATCTCCCTTTGGTGCAACTTCAATCCTTAATGAGCATCCTGTTGTTGGCACCAATGGAAAGTCGTGGGATGGATGGGAACCTTTTCAGACCTTTAGTGGCAACAATGAGAAATTGCAATCAGTTGATCAGGTTTTGGCCCCTAAGAGTGAAAATCAGTCCATGTCTCTGTTGAATCTCACTTGGCCAGATGTCTTGCTGGCCTCAGATTGGCACGAGCTGTATTCTGAGCATGACGGCATGAACCACGCCGGTATGATTGATGTTAGTGATGATGTCAAGAGACAGGTTTTGAATAATTTGTGGAATAACACTGCACTTGAATCTTTGGACAACATGTAG 1740 0.4356 MTDHPLCGAGFDLMFFSLFAPILFQPRDAVFLQFLTQILDFSFNTLTSCLEMSQMTHDIDDNVHGEDQTGSQLNDEGNGGGVVLKKGPWTAAEDVILVDYVNKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQMIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEIVMQAFQDSKHGQGTGEINDGDGCHHDFMERNNYEIHDAIFDSLKENQGILPFVPELSDISANSILPNVLGSPPYCNFLPSALPNHDHLQETSVSFIGSSELNTNGFYPFNHFKDNASDKIAESFGLHSPLDHGASSYGSICYSHSLSNDNYSTSKPTSEAVKSELPSLQYPETEFVSWGTSPPPPLNESIDVLIHSPQPPYALDSGSSPLSCCFLNEFLYQQAKALSYSKNNWSDKSSNSSIATPVDRAESSALNMYETEWEDYADPVSPFGATSILNEHPVVGTNGKSWDGWEPFQTFSGNNEKLQSVDQVLAPKSENQSMSLLNLTWPDVLLASDWHELYSEHDGMNHAGMIDVSDDVKRQVLNNLWNNTALESLDNM 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00135 579 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 58 545 - -
Phco10g00135 579 Pfam Myb-like DNA-binding domain 86 133 IPR001005 -
Phco10g00135 579 Pfam Myb-like DNA-binding domain 139 182 IPR001005 -
Phco10g00135 579 ProSiteProfiles Myb-like domain profile. 84 133 IPR001005 -
Phco10g00135 579 SMART sant 85 135 IPR001005 -
Phco10g00135 579 SMART sant 138 186 IPR001005 -
Phco10g00135 579 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 133 IPR017930 -
Phco10g00135 579 Gene3D - 141 187 - -
Phco10g00135 579 FunFam Transcription factor GAMYB 141 187 - -
Phco10g00135 579 CDD SANT 141 182 IPR001005 -
Phco10g00135 579 ProSiteProfiles Myb-like domain profile. 134 184 IPR001005 -
Phco10g00135 579 SUPERFAMILY Homeodomain-like 85 180 IPR009057 -
Phco10g00135 579 FunFam MYB-related transcription factor 85 138 - -
Phco10g00135 579 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 188 IPR017930 -
Phco10g00135 579 CDD SANT 88 133 IPR001005 -
Phco10g00135 579 Gene3D - 85 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00135 Phco-Chr10 1066094 1072113 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco10g00135 Myb_DNA-binding 1.1e-14 CL0123