Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00116 ATGGCAACTCATCCATTCATGCTTGCCATCACCATTTCCAAGCTACTACTAATCTTCTTCTCTCAATCTTCCTCAGCATTAGACACCATCACTCAATCTCAGCCACTTCTTGATGATGGCAGCACCTTAGTTTCCAATGATGGAACCTTTGAGTTAGGGTTCTTCAGTCCCGGTACTTCCACAAACCGCTACATAGGAATATGGTACAAAATCATCCCAGTTAAAACCATTGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGGGAACACCAGCAACATCAAATCCAGCATGTTAACCATCGCCAATGAGGGAAACATGGTGCTTCTCGACAACAACAATCAAACTATTTGGTCAACAAACATCACTTCACTCACAACTCAGCCTTTGTTGAGCCCCATGGTGCAGCTCTTGGACACTGCAAACTTGGTACTTAAAGAAGGCAACAAGAACAACAACAATGAAGAAAGTTTTGTGTGGCAAAGCTTTGACCACCCTTGTGATACTCTCTTGCCAGGAATGAAGCTTGGATGGGACCTTAAAAGAGGTATTGAAAGGAAGCTGAGTGCATGGAAGAGGTGGGATGATCCATCTTCAGGGAACCTAACTTGGGGTATGCTCCTTAGTAGTAACCCAGAATTGGTTCTGAGGAAAGGTTCAGATGAGTATCATAGGAGTGGACCTTGGAATGGACCAGGGTTCAGTGGCCAACCTGTGTTGAGAATCACTCCAATCGTTGACACCAAATTTGTCAATGATTCAAATGAGGTTTATTACTCATACACGCTTAGGAACAAGTCTGTGATCTCAATAACTTACTTGAACCAAACTCTTCTTCATCGCAAACGCATCACATGGATTCCTGAAAACAAAACTTGGAGGGTTTATGAGTCTGTTCCTAGAGATGACTGTGATCCTTATAACCCATGTGGCCCAAATGGAAATTGCATGGTTAATGAGACACCCATTTGCCAGTGTTTAGAAGAGTTTGAACCCAAATCTCCCCAGAATTGGAACACGTTTGAGTGGACACAAGGATGTGTGCATAGTGAACCTTGGAGTTGTGGGGTGAAAAATGAAGATGGTTTTCGTAGATTTGCTTCAATGAAAGTTCCCGACACGAGAAGTTCTTGGATTTATGGAAATATGGCACTTGAAGATTGTAGGATCAAATGCTTGAAAAACTGTTCTTGCATGGCTTATTCAAACTTGGACATAAGGGAAGGTGGCAGTGGTTGTTCCATTTGGTTTGGTGATCTTATTGATTTGAAATTGGTTCAAGCAAGCCAACAAGATCTATACATTCGAATGGCTATTTCAGGTTCAGATGAAGATAAAAGAAAAAAAGCTTTAGTAATTACGATCCCACTTGTGTCTGTCACCATTTTGCTACTTGTTGTCTTCTTATATATTTACATGGGAAAAAGAAAGCATAAAGGAAAAGAAAGTGACGCAAAGAACATGGTATCAACTGAAAAGAAAGATGAGGAAGAAAACCAAGATTTTGAGCTTCCTTTCTTTGATCTCACTTTAATATTTAATGCCACCAATGGCTTCTCAGAAGATAACAAACTTGGAGAAGGTGGTTTTGGACCAGTATATAAGGGTACACTTCCGGATGGAAGAGATATTGCCATCAAAAGACTCTCAAGGAGTTCAACACAAGGGGTGAAAGAATTCAAGAATGAAGTTATATTGTGTGCAAAACTTCAACATCGAAATCTTGTTAAGGTCCTTGGTTGTTGTGTTCAAGAAGAAGAGAAAATGTTACTATATGAATATATGCCCAACAAAAGCCTAGATTCATTTCTTTTTGATTCAACTCAAAGTAAACTTTTAGATTGGTCTAAGCGCTTCAACATCATATGTGCAATTGCTCGTGGACTTCTTTATCTGCATCAAGATTCCAGACTGAGGATCATACACAGAGATCTAAAAGCAAGTAATATTTTGCTAGATGATGATATGAATCCCAAAATTTCAGATTTTGGCTTAGCAAGACTTTGTGGAGATGATCAAATTGAAGGGAATACAAATAGAGTGGTTGGAACATATGGTTATATGGCACCAGAATATGCCATTGATGGTTTATTCTCCATAAAATCTGATGTATTCAGCTTTGGCGTATTATTGTTGGAGATTGTGAGTGGAAAGAAAAATAGAGGAGTTACAAGTACAAGTGATACTTATAATCTCATTGGACATGCATGGAAATTGTGGAAAGAGGATGATCCAACAAAATTGATTGATATTTGTTTAGAAGACTCATATGTTATATCTGAAGCCTTACGTTGCATTCAAGTTGGTCTTTTATGTCTACAACTTCATCCGAGTGATAGACCGAACATGGCATCTGTGGTTGTTATGTTGACCAATGAAACTATTTTAGCTCAGCCAAAGAAGCCTGGTTTCTTGATAGGAAAAGTGACTGAAGTAGAATATTCTAGTGGAAAAGAAATATTTGTTTCAGTTAATGAAATGTCTATTTCACTATTGGATGCTAGATAA 2508 0.388 MATHPFMLAITISKLLLIFFSQSSSALDTITQSQPLLDDGSTLVSNDGTFELGFFSPGTSTNRYIGIWYKIIPVKTIVWVANRDNPIKGNTSNIKSSMLTIANEGNMVLLDNNNQTIWSTNITSLTTQPLLSPMVQLLDTANLVLKEGNKNNNNEESFVWQSFDHPCDTLLPGMKLGWDLKRGIERKLSAWKRWDDPSSGNLTWGMLLSSNPELVLRKGSDEYHRSGPWNGPGFSGQPVLRITPIVDTKFVNDSNEVYYSYTLRNKSVISITYLNQTLLHRKRITWIPENKTWRVYESVPRDDCDPYNPCGPNGNCMVNETPICQCLEEFEPKSPQNWNTFEWTQGCVHSEPWSCGVKNEDGFRRFASMKVPDTRSSWIYGNMALEDCRIKCLKNCSCMAYSNLDIREGGSGCSIWFGDLIDLKLVQASQQDLYIRMAISGSDEDKRKKALVITIPLVSVTILLLVVFLYIYMGKRKHKGKESDAKNMVSTEKKDEEENQDFELPFFDLTLIFNATNGFSEDNKLGEGGFGPVYKGTLPDGRDIAIKRLSRSSTQGVKEFKNEVILCAKLQHRNLVKVLGCCVQEEEKMLLYEYMPNKSLDSFLFDSTQSKLLDWSKRFNIICAIARGLLYLHQDSRLRIIHRDLKASNILLDDDMNPKISDFGLARLCGDDQIEGNTNRVVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIVSGKKNRGVTSTSDTYNLIGHAWKLWKEDDPTKLIDICLEDSYVISEALRCIQVGLLCLQLHPSDRPNMASVVVMLTNETILAQPKKPGFLIGKVTEVEYSSGKEIFVSVNEMSISLLDAR 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00116 835 SMART blect_4 34 166 IPR001480 -
Phco10g00116 835 Pfam Domain of unknown function (DUF3403) 791 835 IPR021820 GO:0004674
Phco10g00116 835 SMART serkin_6 519 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00116 835 Pfam D-mannose binding lectin 76 192 IPR001480 -
Phco10g00116 835 CDD EGF_CA 302 334 - -
Phco10g00116 835 Gene3D - 21 163 IPR036426 -
Phco10g00116 835 ProSiteProfiles PAN/Apple domain profile. 355 438 IPR003609 -
Phco10g00116 835 Pfam Protein tyrosine and serine/threonine kinase 522 743 IPR001245 GO:0004672|GO:0006468
Phco10g00116 835 CDD STKc_IRAK 525 792 - -
Phco10g00116 835 Gene3D Phosphorylase Kinase; domain 1 478 594 - -
Phco10g00116 835 Pfam S-locus glycoprotein domain 225 334 IPR000858 GO:0048544
Phco10g00116 835 PIRSF SRK 1 835 IPR024171 GO:0004674
Phco10g00116 835 Pfam PAN-like domain 355 423 IPR003609 -
Phco10g00116 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 595 798 - -
Phco10g00116 835 Gene3D Transferase(Phosphotransferase) domain 1 595 801 - -
Phco10g00116 835 ProSiteProfiles Bulb-type lectin domain profile. 28 158 IPR001480 -
Phco10g00116 835 Gene3D Hepatocyte Growth Factor 354 436 - -
Phco10g00116 835 ProSiteProfiles EGF-like domain profile. 300 336 IPR000742 -
Phco10g00116 835 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 781 - -
Phco10g00116 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 197 IPR036426 -
Phco10g00116 835 SUPERFAMILY Protein kinase-like (PK-like) 500 800 IPR011009 -
Phco10g00116 835 SMART ntp_6 358 437 IPR003609 -
Phco10g00116 835 CDD PAN_AP_plant 354 438 - -
Phco10g00116 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Phco10g00116 835 ProSiteProfiles Protein kinase domain profile. 519 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00116 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 484 594 - -
Phco10g00116 835 CDD B_lectin 36 166 IPR001480 -
Phco10g00116 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00116 Phco-Chr10 951252 954799 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00116 PK_Tyr_Ser-Thr 1.1e-47 CL0016