Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00081 ATGAATAATTTTTCTCATGTTCCCCCGGGCTTTAGGTTCCACCCCACTGATGAGGAACTTGTTGACCACTATCTGAGGAAGAAAATTACCTCAAGAAGGATTGACCTAGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCAATCTATTCAAAGCATGAGTTGATAGGGATGAGGAAAACCCTAGTCTTTTACAAAGGTCGAGCCCCCAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCACACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTACCAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACATGGATTCACCAAAGCAAACCTCTCAACCTAATTTGCCCTACCACTTCCCATATCCATGCAAGAAAGAGCTAGATTTGCCCTACCATTTGCCTCTCCACCTTCCATTGGAGAATCAAAAATTGCTTCAAACTGCCTCCAACTCAATCACACCATATGCTGCAGAAGAAAACCATGTGATGCAGCAGCCAGTATCATCAATCATGCAGCAACAACTTCAACACTCTGCTCAACAAAATTTTCATGCAGTGTTTGGAAACAATGTCAATGAACAAGTTGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAACTTAGCCAGGAAGATGCACCCAAAGAGAACAGTTACTCAAACACAGACAACAACAACAACAACATCTTTCATGTGAAGAACAATGGCAATGTTGAACAGTTGGGAGACTTGGACAAGGAGGAGATGATGCCTGAAAATGCCTCAACTTCAAACTCAAGCTGTCCAATTGACATGTGGAAATAG 1044 0.4176 MNNFSHVPPGFRFHPTDEELVDHYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLPTMRKLSEHDSPCWYDDQVSFMQDMDSPKQTSQPNLPYHFPYPCKKELDLPYHLPLHLPLENQKLLQTASNSITPYAAEENHVMQQPVSSIMQQQLQHSAQQNFHAVFGNNVNEQVADWRALDKYVASQLSQEDAPKENSYSNTDNNNNNIFHVKNNGNVEQLGDLDKEEMMPENASTSNSSCPIDMWK 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00081 347 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Phco10g00081 347 MobiDBLite consensus disorder prediction 288 314 - -
Phco10g00081 347 FunFam NAC domain-containing protein 16 160 - -
Phco10g00081 347 MobiDBLite consensus disorder prediction 331 347 - -
Phco10g00081 347 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Phco10g00081 347 MobiDBLite consensus disorder prediction 290 314 - -
Phco10g00081 347 MobiDBLite consensus disorder prediction 328 347 - -
Phco10g00081 347 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Phco10g00081 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 290 - -
Phco10g00081 347 Gene3D NAC domain 16 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00081 Phco-Chr10 694572 696919 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco10g00081 NAM 3.3e-38 No_clan