Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00064 ATGAAAAGAGCGAAACCATACCTCACGAGGAACATGTCGTGGTCACCACCTGAAGAACCACCAATACTAGTCAGCTCCCTTCTTCTTCTGATTGCCTTATTCGTTACAGTAACAACAACAGCAACAACAACAGCAACAACAGCAGAACCACAACCAGAAACGCCGCCAACCTCCGATGCGCTTCTCTTGATGCGCTTCAAGCAGTTACACGTTTCCTCCGACCCCCGCGCCTTCCTCTCCGACTGGCTCCCCCACGCGCCGTCTCCCTGCGCGTGGCGCGGGGTCACCTGCTCAGCCCAGCCCCGCCGCGTCACCGCCATCGACCTCGCCGACGCCGCCCTCTCCGGCTCCCTCCACCTCCCCACCCTCACGTCCCTCCCCTCCCTCCACACCCTCGTCCTACGTGGCAACTCCTTCACCGCTTTCAACCTCAGCGTTTCCACGTTTTGCGCGCTTCAAAACCTCGACCTCTCTTCCAACAACTTCTCCGGGAAGTTTCCTTTCGCAAACCTAACTCCCTGTAACCGCCTCACTTACTTGAACCTCTCGAATAATCTAATCACCGCAGGGCTCGGCTCCGGGCCTGGGCTTGGGCCTTCCCTGGCCCAACTCGACTTGTCCAGAAACCTCGTCTCCGACGTCAGTCTTCTCGTCTCCGCTCTCGCCGGCTCCGCTCTCGTTTTTCTGAACTTTTCCCACAACAAGCTCGCGGGTCAACTCAGCGAGTCGCTCGTTTCGCGAAGCGCGAACCTCTCCACCTTGGACCTCTCTTACAACCTTCTCTCCGGGGCGGTGCCGCCTCAGCTCGTGAATGACGCCGTTCAGGTGCTCGATCTCTCGTCCAACAACTTCTCGCGGCTGGACTTCGTCTCGTGCGGGAGCCTCACGCGGCTGAGCTTCTCGCACAATGCGCTCTCCCGAGACGACTTTCCGCGCGGGTTGAGCAGCTGCGACCGGCTCCAGGTTCTGGATCTTTCTCGCAATGAGTTCGAAGCCGAGATTCCGGGGGAGATTCTTCGGAGTTTGTGGAGCTTGAAGTCTTTGTTTCTCGAGCGCAACAAATTCTACGGCGAGATTCCGAGCGAGCTCGGAAGCCTCTGTGGAAGTCTCGTGGAACTTGATCTCTCCGAGAACATGCTTTCTGGTGCGTTGCCTCTGAGTTTGGTGAACTGTTCTTCTCTTCGGAGTTTGAACCTCGCGAGGAACTATCTCTCTGGGAACTTCTTGGTTTCCGTGGTTAGCAAGCTTCAGAGTCTTGAGTATCTAAACGCGGCGTTTAATAACATAACGGGACCGGTTCCGTTGTCGCTCGTTAACCTGAAACGGCTTCGGGTGCTTGACTTGAGCTCGAACCGGTTAAACGGCAATGTTCCGTCGTCGTTTTGCCCTTCCGGTTTGGAGAAGTTGATCCTGGCCGGGAATTACCTTTCCGGGACGGTGCCGTCACAGGTCGGTGATTGTAAGAGTTTGAGAACCTTGGATTTCAGCTTTAACAGCTTGAACGGTTCGATTCCGTGGGAGGTTTGGGCCTTGCCTAACCTCTCTGATTTGATTATGTGGGCGAATAATCTCACTGGGGAAATCCCAGAAGGGATTTGTGTTAAAGGAGGGAACTTGGAGACTTTGATTCTCAACAATAACTTCATTTCTGGGTCAATTCCGAAGTCAATTGCCAATTGCACCAACATGATATGGGTGTCGCTGGCGAGCAACCGGTTAACCGGGGCGATACCTTCTGGGATTGGGAATTTGAATGCATTGGCGATTCTCCAGCTGGGGAACAACTCGCTGAGTGGGAGGATTCCGCCGGAGATAGGCGAGTGTAGGAGGCTGATATGGTTAGATTTGAATAGCAATAACCTAACTGGGAATATCCCGTTTGAGCTTGCTGATCAAGCGGGGTTGGTTATCCCGGGCAGGGTTTCGGGGAAGCAGTTTGCGTTTGTGAGGAACGAGGGTGGGACTAGTTGCAGGGGTGCCGGTGGGCTGGTTGAGTTTGAGGACATCAGAACAGAGAGGCTTGAAGGTTTTCCCATGGTGCATTCGTGCCCGTTGACGCGGATTTACTCCGGTTGGACTGTGTATACTTTTGCTTCCAATGGGAGCATGATCTACCTTGACCTTTCCTACAACTTGTTGTCTGGGACTGTTCCTGGGAATTTGGGTGTAATGGCCTATTTGCAGGTGTTGAATTTGGGGCACAATAGGTTGAGTGGGAACATTCCAGATAGTTTTGGTGGTTTGAAAGCAATTGGGGTGCTTGATCTGTCTCATAATAGTCTTAATGGGTCCATCCCTGGTTCATTGGAGAGCCTTTCTTTTCTCAGTGACCTTGACGTCTCTAATAATAATCTTACCGGGTCCATTCCTTCTGGAGGTCAGTTGACTACTTTTCCAGCTTCTAGATACGATAACAACTCTGGCCTTTGTGGCCTGCCGCTGCCAAAGTGTGGTGCTTTGAAGAATCGCTCAGTGGGTGTTCGGGGTTGGAAGAAGAAGCAGCCTGTAGCAGCTGGGGTTGTCATTGGTTTGCTTTGCTTCCTCTTGTTTGCGCTTGGGCTTGTGTTAGCTTTGTACAGGGTGAGGAAGGGGCAGAGGAAGGAGGAGATCAGAGAAAAGTACATAGAGAGTCTTCCGACTTCGGGGAGCAGTAGTTGGAAGCTTTCCAGCTTTCCTGAGCCTCTGAGCATCAATGTTGCCACCTTTGAGAAGCCTCTGCGGAAGCTGACGTTTGCGCATCTTCTTGAGGCTACTAATGGTTTCAGTGCTGAGAGTATGATCGGTTCTGGGGGATTTGGTGAAGTGTACAAGGCTAAGCTGAAAGATGGCTGTGTTGTTGCCATCAAGAAGCTCATTCATGTGACGGGTCAGGGAGATAGGGAGTTCATGGCTGAGATGGAAACTATTGGGAAGATTAAGCACAGGAACCTGGTTCAGCTGCTGGGTTACTGTAAGGTGGGGGAGGAGAGGCTTCTTGTGTACGAGTTCATGAAATGGGGAAGTCTTGAGGCTGTTCTACATGAAAGGGCAAAAGGAGGAGGTTCAAATCTTGATTGGGGTGCAAGAAAGAAGATTGCCATAGGGTCAGCAAGAGGTCTTGCATTTCTTCATCATAGTTGCATTCCTCACATTATACACAGAGACATGAAGTCCAGCAACATTCTTCTTGATGAGAATTTCGAGGCTAGGGTTTCTGATTTTGGCATGGCAAGATTGGTTAATGCCCTCGATACTCATCTAACTGTCAGCACACTTGCCGGAACACCGGGTTATGTACCCCCTGAGTACTACCAGAGTTTTCGATGTACTGCTAAAGGGGATGTCTACAGCTACGGTGTCATACTGCTTGAGCTTCTATCAGGGAGAAGACCAATCGACTCTTCCGAGTTTGGTGATGACAGCAATCTTGTTGGTTGGTCTAAGAAGCTTTTCAAAGAGAAAAGAATTAATGAAATACTTGATCCTGATTTAATTGTGCAAACATCTAGTGAAAGTGAACTATTTCAATATTTGAGAATTGCCTTTGAATGTCTAGATGAGAGACCCTACCGTCGGCCCACCATGATACAAGTGATGGCCATGTTCAAAGAGCTTCAGGTTGACACAGATAATGATATGCTTGATAACTTCTCTCTGAGAGACAATGTCATTGATGAAGCATGA 3663 0.5078 MKRAKPYLTRNMSWSPPEEPPILVSSLLLLIALFVTVTTTATTTATTAEPQPETPPTSDALLLMRFKQLHVSSDPRAFLSDWLPHAPSPCAWRGVTCSAQPRRVTAIDLADAALSGSLHLPTLTSLPSLHTLVLRGNSFTAFNLSVSTFCALQNLDLSSNNFSGKFPFANLTPCNRLTYLNLSNNLITAGLGSGPGLGPSLAQLDLSRNLVSDVSLLVSALAGSALVFLNFSHNKLAGQLSESLVSRSANLSTLDLSYNLLSGAVPPQLVNDAVQVLDLSSNNFSRLDFVSCGSLTRLSFSHNALSRDDFPRGLSSCDRLQVLDLSRNEFEAEIPGEILRSLWSLKSLFLERNKFYGEIPSELGSLCGSLVELDLSENMLSGALPLSLVNCSSLRSLNLARNYLSGNFLVSVVSKLQSLEYLNAAFNNITGPVPLSLVNLKRLRVLDLSSNRLNGNVPSSFCPSGLEKLILAGNYLSGTVPSQVGDCKSLRTLDFSFNSLNGSIPWEVWALPNLSDLIMWANNLTGEIPEGICVKGGNLETLILNNNFISGSIPKSIANCTNMIWVSLASNRLTGAIPSGIGNLNALAILQLGNNSLSGRIPPEIGECRRLIWLDLNSNNLTGNIPFELADQAGLVIPGRVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPLTRIYSGWTVYTFASNGSMIYLDLSYNLLSGTVPGNLGVMAYLQVLNLGHNRLSGNIPDSFGGLKAIGVLDLSHNSLNGSIPGSLESLSFLSDLDVSNNNLTGSIPSGGQLTTFPASRYDNNSGLCGLPLPKCGALKNRSVGVRGWKKKQPVAAGVVIGLLCFLLFALGLVLALYRVRKGQRKEEIREKYIESLPTSGSSSWKLSSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESMIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVQLLGYCKVGEERLLVYEFMKWGSLEAVLHERAKGGGSNLDWGARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGRRPIDSSEFGDDSNLVGWSKKLFKEKRINEILDPDLIVQTSSESELFQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTDNDMLDNFSLRDNVIDEA 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00064 1220 Pfam Brassinosteroid receptor island domain 634 697 IPR045381 -
Phco10g00064 1220 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 696 817 - -
Phco10g00064 1220 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 368 1197 - -
Phco10g00064 1220 Pfam Leucine Rich Repeat 442 462 IPR001611 GO:0005515
Phco10g00064 1220 Pfam Leucine Rich Repeat 538 560 IPR001611 GO:0005515
Phco10g00064 1220 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 145 411 - -
Phco10g00064 1220 SUPERFAMILY Protein kinase-like (PK-like) 902 1195 IPR011009 -
Phco10g00064 1220 FunFam serine/threonine-protein kinase BRI1-like 2 882 996 - -
Phco10g00064 1220 Pfam Leucine rich repeat N-terminal domain 57 98 IPR013210 -
Phco10g00064 1220 Gene3D Ribonuclease Inhibitor 200 818 IPR032675 -
Phco10g00064 1220 SMART LRR_typ_2 772 795 IPR003591 -
Phco10g00064 1220 SMART LRR_typ_2 440 463 IPR003591 -
Phco10g00064 1220 SMART LRR_typ_2 317 341 IPR003591 -
Phco10g00064 1220 SMART LRR_typ_2 511 535 IPR003591 -
Phco10g00064 1220 SMART LRR_typ_2 342 366 IPR003591 -
Phco10g00064 1220 SMART LRR_typ_2 724 747 IPR003591 -
Phco10g00064 1220 SMART LRR_typ_2 126 149 IPR003591 -
Phco10g00064 1220 SMART LRR_typ_2 584 608 IPR003591 -
Phco10g00064 1220 SMART LRR_typ_2 748 771 IPR003591 -
Phco10g00064 1220 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 412 638 - -
Phco10g00064 1220 Gene3D Ribonuclease Inhibitor 59 173 IPR032675 -
Phco10g00064 1220 PRINTS Leucine-rich repeat signature 440 453 - -
Phco10g00064 1220 PRINTS Leucine-rich repeat signature 370 383 - -
Phco10g00064 1220 Gene3D Phosphorylase Kinase; domain 1 884 996 - -
Phco10g00064 1220 SUPERFAMILY RNI-like 338 627 - -
Phco10g00064 1220 Gene3D - 641 698 - -
Phco10g00064 1220 SMART serkin_6 921 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00064 1220 Pfam Leucine rich repeat 727 785 IPR001611 GO:0005515
Phco10g00064 1220 Gene3D Transferase(Phosphotransferase) domain 1 997 1216 - -
Phco10g00064 1220 Pfam Protein kinase domain 923 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00064 1220 ProSiteProfiles Protein kinase domain profile. 921 1198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00064 1220 ProSitePatterns Protein kinases ATP-binding region signature. 927 950 IPR017441 GO:0005524
Phco10g00064 1220 SUPERFAMILY L domain-like 69 406 - -
Phco10g00064 1220 SUPERFAMILY L domain-like 694 814 - -
Phco10g00064 1220 FunFam Serine/threonine-protein kinase BRI1-like 1 641 698 - -
Phco10g00064 1220 FunFam Brassinosteroid LRR receptor kinase 997 1200 - -
Phco10g00064 1220 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1044 1056 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00064 Phco-Chr10 457874 461536 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Phco10g00064 Pkinase 2.2e-45 CL0016