Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00049 ATGAATGTGACAAATAAGCCAAGCCCAGATGGTTCCACAAATGGGTTTCAGTCACAGCTTCAACACCAACACAGTAATGGGTGGGAGGGATCATCTACACACCCACCCTCTAAGCCTTATCCTGCACCAACAGCTAGCTACCAGGACATTGTTCGTGATGAAAACCTCTTCTGGGAAAAGCTTCAAGCTTTTCACCAATCACTTGGCACCAAATTTAAGGTTGTTATTGTGGGAGGAAAGTCACTTGATCTACATCGACTTTTTGTGGAAGTTACATCTCGTGGAGGGATCGAAAAGGTGATTGTTGATCGTAAGTGGAAGGAAGTGATTCTGACCTTCAACTTCAAAGACACCATAACGAGTGCATCATTTGTGGTGCGCAAATCCTATCTATCGATGCTTTATCACTTTGAGCAAGTGTATTATCTTGGGAGGCAAGGCTTTCCTTCCCAAACACCTGATATTATGATTAGAGGCCAACCAGGCCTTCCCAATAGCTCCCGAACCATTCTGGAGGTTGCTGATGTGAATGATTCACCTCCTCAGGCTGCTCCAGTGCATGGATATGATGGTGTGCTTTCTGGAACAATTGATCTGAAATTTGATGGTGGATACATAGTCACAGTGACTGTGGGTTCCGAGGAGCTGAAAGGTGTCCTGTTTCATGTTCCTGATAACGTGTCCCAGAGTTCTCATACCGAAGGCAGGCCTAGTTCACAGAATCATGGTGAAGGCACATCCGGGTCACAGGGTCGAAAGAGAGCAAAATATACACCACGTGATCCATTCCGGCCGAAATCAAACAGGAGTGGTTACAACTTTTTCTTTGCTGAGAATTATGCCATGCTGAAGCCCTCTTATCATGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTCTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGGTGAAAGATAAGGAAAGATATAGAACTGAACTGATGGAGTACAAATCCAACAATTCAACTCCAAGTGCTCAATAG 1026 0.4454 MNVTNKPSPDGSTNGFQSQLQHQHSNGWEGSSTHPPSKPYPAPTASYQDIVRDENLFWEKLQAFHQSLGTKFKVVIVGGKSLDLHRLFVEVTSRGGIEKVIVDRKWKEVILTFNFKDTITSASFVVRKSYLSMLYHFEQVYYLGRQGFPSQTPDIMIRGQPGLPNSSRTILEVADVNDSPPQAAPVHGYDGVLSGTIDLKFDGGYIVTVTVGSEELKGVLFHVPDNVSQSSHTEGRPSSQNHGEGTSGSQGRKRAKYTPRDPFRPKSNRSGYNFFFAENYAMLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGVKDKERYRTELMEYKSNNSTPSAQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00049 341 CDD HMG-box_AtHMGB9-like 265 331 - -
Phco10g00049 341 Pfam ARID/BRIGHT DNA binding domain 55 138 IPR001606 GO:0003677
Phco10g00049 341 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Phco10g00049 341 SUPERFAMILY HMG-box 264 334 IPR036910 -
Phco10g00049 341 SMART bright_3 52 143 IPR001606 GO:0003677
Phco10g00049 341 ProSiteProfiles ARID domain profile. 51 142 IPR001606 GO:0003677
Phco10g00049 341 Gene3D - 43 151 IPR036431 GO:0003677
Phco10g00049 341 Gene3D High mobility group box domain 248 340 IPR036910 -
Phco10g00049 341 SMART ARID_2 48 138 - -
Phco10g00049 341 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Phco10g00049 341 MobiDBLite consensus disorder prediction 1 33 - -
Phco10g00049 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 24 340 - -
Phco10g00049 341 CDD ARID_HMGB9-like 53 138 IPR045303 GO:0003677
Phco10g00049 341 SMART hmgende2 264 333 IPR009071 -
Phco10g00049 341 MobiDBLite consensus disorder prediction 1 45 - -
Phco10g00049 341 MobiDBLite consensus disorder prediction 227 253 - -
Phco10g00049 341 SUPERFAMILY ARID-like 49 152 IPR036431 GO:0003677
Phco10g00049 341 MobiDBLite consensus disorder prediction 227 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00049 Phco-Chr10 342772 346894 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco10g00049 ARID 1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00049 10 342772 346894 Phco10g00049 10 342772 346894 ECH