Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00043 ATGTCGATGCTGCTGAGGAAGGCTTGGGAAATGGTGTTGTGGAGATCTGATTCATCAACGTCAGCATCATCATCATCAACAACAACAACTACAACAAGATTTTCACTAGAAGTGCCACGTTCTGACATGGGTGAATTGGAGCAGCTACCCAGTGACATCTTGATGCAAATTCTGAAGCTTTTGGGTCCAAAAGCGGTTGCAAAATTGAGTGTGGTTTGCAAGAGTTTGAGATCCATTGTCTCTGATAACAGACTTTGGATTTACTTCATTCAGACCCATCAGGCTGAACCTTCTGGGGATTCCGTCTTCTTTGCTGAGACCACCTTGAGTTCTGGCTACCCTCTACCAGCTTACGTTGGTTACTGGCCCCAGCTATCATTCAAGCATATCTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATTATTGATGGTGGTTCTGGCTACTGCAAATTTGGCTGGAGCAAATACGAATGCCCATCTGGTCGATCAGCAACATTTTTGGAGTTTGGTAACATTGAGTCTCCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCAAATAAACAACCAGTTATTGTTTCAGTACCAATATGTCATTATGAAGATACTCAATCAGCAAAAGCTTCAAGACGACAGCTTAAAGAGGCAATCTACGCCTCCTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTGGCTCTGTACGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACTTCTATAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACTGGATTTCTCAGGGAGAAGATGCAATTGAACAACTTAACTTTTCAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTTGCACATGATTATGAAGCTGAGCTATCAAAAGATACAAAAGCATCATATGAAGCTGCAGGAGAAGGATGGTTTACCCTCTCAAAAGAGAGGTTTCAGACAGCAGAGATCTTATTCCAGCCTCATTTTGCTGGAGTGCAAGCCATGGGTCTGCACCAAGCAATAGCACTTTGTGTGGAACATTGCCATTCTGCAGATTTACCAGGTGACAACGATTGGTACAAAACTATAGTTTTATCAGGGGGAACTGCATGCCTACCTGGTTTGGCAGAAAGGGTAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACATGTTCAAAGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACACCATGGTTTGGAGCTAAGATTATTAGCAATTTGAGCACCTTTCCTGGTCATTGGTGTGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAGCCTCATATGGTGA 1437 0.4294 MSMLLRKAWEMVLWRSDSSTSASSSSTTTTTTRFSLEVPRSDMGELEQLPSDILMQILKLLGPKAVAKLSVVCKSLRSIVSDNRLWIYFIQTHQAEPSGDSVFFAETTLSSGYPLPAYVGYWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYECPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYEDTQSAKASRRQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLTFQSLYTVRTLKEKLCYVAHDYEAELSKDTKASYEAAGEGWFTLSKERFQTAEILFQPHFAGVQAMGLHQAIALCVEHCHSADLPGDNDWYKTIVLSGGTACLPGLAERVEKELHALLPPYMFKGIRVIPPPYGADTPWFGAKIISNLSTFPGHWCVTKKQFRQKPRLSLIW 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00043 478 SUPERFAMILY F-box domain 38 97 IPR036047 GO:0005515
Phco10g00043 478 CDD NBD_sugar-kinase_HSP70_actin 141 285 - -
Phco10g00043 478 SMART actin_3 138 468 IPR004000 -
Phco10g00043 478 SUPERFAMILY Actin-like ATPase domain 254 469 IPR043129 -
Phco10g00043 478 Pfam Actin 187 469 IPR004000 -
Phco10g00043 478 ProSiteProfiles F-box domain profile. 43 89 IPR001810 GO:0005515
Phco10g00043 478 SUPERFAMILY Actin-like ATPase domain 140 260 IPR043129 -
Phco10g00043 478 Gene3D - 183 470 - -
Phco10g00043 478 Pfam F-box domain 47 87 IPR001810 GO:0005515
Phco10g00043 478 Gene3D - 35 135 - -
Phco10g00043 478 Gene3D Actin; Chain A, domain 4 288 371 - -
Phco10g00043 478 SMART fbox_2 49 89 IPR001810 GO:0005515
Phco10g00043 478 PANTHER ACTIN 182 470 IPR004000 -
Phco10g00043 478 Gene3D - 245 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00043 Phco-Chr10 308838 316003 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00043 10 308838 316003 Phco10g00043 10 308838 316003 ECH