Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00012 ATGGGGAGAGGAAAGATTGAAATCAAAAGGATTGAGAACACCACAAATCGGCAGGTAACGTTCTGCAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGTTATCCGTGCTGTGTGATGCAGAAGTGGCTCTCATTGTCTTCTCCAGCCGTGGCAGACTCTATGAGTATTCAAACAACAACATAAGATCAACAATTGAGAGGTACAAAAAGGCATGTTCAGATCATTCAAGTACCAGCACTACCACCGAAATCAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGAGACAGCAAATACAGATGCTGCAAAATTCAAACAGGCACCTAATGGGTGATGCTTTAAGCACATTGACTGTGAAGGAACTTAAGCAGTTGGAGAATAGACTTGAAAGAGGAATCACTAGAATCAGATCTAAGAAACATGAGATGCTACTGGCAGAAATTGAATACTTCCGGAAAAGGGAAATTGAACTGGAAAATGAAAATCTTTGCCTTCGGACTAAGATTACTGACGTTGAGAGGATTCAGCAAGTAAACATGGTTTCTGGACCAGAGCTGAATGCCATTCAGGCATTAGCTTCTCGTAACTTCTTCAATCCAAACATGATGGAGGGTGGATCTGTTTACCCTCAGTCAGATAAGAAGATTCTTCATCTTGGGTTAGGAGAGAGAGAGAGAGGAAGGAACAGGAAGTGGGAATTGGTTAAGAAATTAAGAAAGGAAGGAAGAGAATGA 741 0.4103 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSSTSTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFRKREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQALASRNFFNPNMMEGGSVYPQSDKKILHLGLGERERGRNRKWELVKKLRKEGRE 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00012 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Phco10g00012 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco10g00012 246 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco10g00012 246 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Phco10g00012 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco10g00012 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco10g00012 246 Coils Coil 124 144 - -
Phco10g00012 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco10g00012 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco10g00012 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco10g00012 246 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Phco10g00012 246 Coils Coil 87 107 - -
Phco10g00012 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Phco10g00012 246 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Phco10g00012 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco10g00012 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00012 Phco-Chr10 98213 109792 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco10g00012 K-box 6.4e-27 No_clan