Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00009 ATGGAGGGTGGGCGGAGAAAGTACGGCGGAGGGTCGGCGGAGAGGGAATCTAAGCATTTTCTGAAGATCATACTTCCCTCTGCCATTCATGCTAGCCAAATGAGAATTCCCGAGGAATTTATAAAGAGATTTGGAGATGAACTATCAACTGTTGCTACAATTACTGTTCCTGATGGTCGTGTTTGGAAAATGAGGCTGAAGAAATGTGGAAAAGATGTTTTCTTCAGCAGCAACTGGCGAGGGTTTGTAAACTACTATTCTCTGGGGTATGGCTCCCATCTAATTTTCAGATATATAGGGAACTCAAAATTTCGTGTTCTTATATTTGATATTACTGCTGCCGAGATTTGTTATCCTCCCCAAACTCGGGGCACTAATGAACCAAACTCGGAGAATTGGAAGAGATCCAAGTTTGAGGATCAGCAGCAGCACCACAGCTACCTATCAAAAAAGAAAGAGCTTGTGGTGGGGAATGGGGTAGAAACTACCGATGAAGATTATGTGAATTTAATACGTCCGAGTCAGACTAAAGGAAGGAAGAAAAAATGTTATTATTCTCATGGGAAACAACTCAAAAGTGGATGCAGTGAAAACCACTCTTCTTGGGAGATAACAAAGGATGTTGCTCCTGCTAGTGATAGATTAATGCCAAAAAACCCTTTTGTTACTTGTACCATCAAGTCTTCTCGATTGTATGTGTCAAGTGAATTTGCTGGCAAATATCTGAAGCCAGGTGTTGGTATGATGCTCCAAAATTGTAATGGAGAGCAGTGGGATGTTTCTTGCTCGTGTCATAGCCGTAGCAGAGCAATGATAATATCTAGGGGATGGGCTAAATTTGTGAGGGACAACGATCTATCAGAAGGAGGTCTATGTGTGTTGGAGTTAATAAAGAGGGACCCCATTGTGCTAAAATTTACTGTGCGTGGCGAAGCTCAATATTATGACGTTGACGTTTGA 960 0.4198 MEGGRRKYGGGSAERESKHFLKIILPSAIHASQMRIPEEFIKRFGDELSTVATITVPDGRVWKMRLKKCGKDVFFSSNWRGFVNYYSLGYGSHLIFRYIGNSKFRVLIFDITAAEICYPPQTRGTNEPNSENWKRSKFEDQQQHHSYLSKKKELVVGNGVETTDEDYVNLIRPSQTKGRKKKCYYSHGKQLKSGCSENHSSWEITKDVAPASDRLMPKNPFVTCTIKSSRLYVSSEFAGKYLKPGVGMMLQNCNGEQWDVSCSCHSRSRAMIISRGWAKFVRDNDLSEGGLCVLELIKRDPIVLKFTVRGEAQYYDVDV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00009 319 CDD B3_DNA 18 110 IPR003340 GO:0003677
Phco10g00009 319 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Phco10g00009 319 SMART B3_2 221 312 IPR003340 GO:0003677
Phco10g00009 319 SMART B3_2 20 112 IPR003340 GO:0003677
Phco10g00009 319 Pfam B3 DNA binding domain 226 307 IPR003340 GO:0003677
Phco10g00009 319 Pfam B3 DNA binding domain 20 110 IPR003340 GO:0003677
Phco10g00009 319 SUPERFAMILY DNA-binding pseudobarrel domain 14 111 IPR015300 -
Phco10g00009 319 SUPERFAMILY DNA-binding pseudobarrel domain 218 300 IPR015300 -
Phco10g00009 319 CDD B3_DNA 225 309 IPR003340 GO:0003677
Phco10g00009 319 Gene3D - 11 113 IPR015300 -
Phco10g00009 319 PANTHER B3 DOMAIN-CONTAINING 13 299 - -
Phco10g00009 319 ProSiteProfiles B3 DNA-binding domain profile. 216 312 IPR003340 GO:0003677
Phco10g00009 319 Gene3D - 203 311 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00009 Phco-Chr10 86760 88269 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco10g00009 B3 2e-14 CL0405