Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun635g00048 ATGGATTATAATCACCCTGCCTCATCTACAGGATCCTCTTCAAAGATAAACAGAAGCAAGGAGAAAAAGGGTGCTAAGAAATGCAAAGGAGTGAGGCTCTCCACCGATCCTCAAAGCGTGGCAGCAAGAGAACGAAGGCACAGAATCAGTGACCGGTTCAAGATCTTGCAGAGCATGGTCCCTGGTGGAAGCAAGATGGACACAGTCTCCATGCTGGACGAAGCTATTCAGTATGTGAAGTACCTCAAAACTCAGATATGGCTCCACCAAACCATGATCAATTTCTTTGATGATAACGACTCACTTTCTCCTATGTACCTTAGTGATTGCTACTTCCCTTCTGACCCTTCTGAACACTTCATTTCCCCTCAGCAAGATCCACAGCTTGATCATAGCATGCACAATTTTCCTCATCTGCCACAACCACAATGCAGCTTCCATGGTGAAGACACAACCTACTTTGATATGCCTCTTTAA 477 0.4507 MDYNHPASSTGSSSKINRSKEKKGAKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLDEAIQYVKYLKTQIWLHQTMINFFDDNDSLSPMYLSDCYFPSDPSEHFISPQQDPQLDHSMHNFPHLPQPQCSFHGEDTTYFDMPL* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun635g00048 158 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 22 131 IPR045843 GO:0003700|GO:0006355
Phacun635g00048 158 MobiDBLite consensus disorder prediction 1 15 - -
Phacun635g00048 158 Pfam Helix-loop-helix DNA-binding domain 43 83 IPR011598 GO:0046983
Phacun635g00048 158 Gene3D - 37 91 IPR036638 GO:0046983
Phacun635g00048 158 FunFam Transcription factor LAX PANICLE 36 99 - -
Phacun635g00048 158 SMART finulus 39 88 IPR011598 GO:0046983
Phacun635g00048 158 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 82 IPR011598 GO:0046983
Phacun635g00048 158 MobiDBLite consensus disorder prediction 1 39 - -
Phacun635g00048 158 CDD bHLH_AtIND_like 34 93 - -
Phacun635g00048 158 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 92 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun635g00048 27 86 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 61.667 2.39e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phacun635g00048 HLH 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun635g00048 - - pvu:PHAVU_010G073400g 314.309