Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun635g00011 ATGAAAGTTCTTAGTTACATCTCTTTTGTTGTAATAGTTTATTCCCTGCTCCAAAACCCTAGCCATGGTCTCAATCTCAAATTATTTAATTCTTCCAAAATTGAAAACGACGATGAATGGAAAGTAGCAGCAGCTACATGGTACGGGGAACCAGATGGTGCTGGATCTGATGGGGGTGCTTGTGGATATGTTGAGAGTGTGGAGAAACCTCCACTCTCTAAAATGATCTCAGCTGGAGGTTCTTCTCTTTATAGAGGTGGCAGAGGATGTGGAGCTTGTTATCAGGTGAAATGCACAGAAAACACAGCTTGTTCAGGAAATGCAGTGAGTGTGATGATAACTGATGAATGCCCTGGCTGTTTCTTAGGATCAGTCCATTTTGATCTGAGTGGCACTGCATTTGGTTCCATGGCAACTCCAGACAAAGCAGATAATCTTCGTAATGTTGGAGAACTTCAAATTCTCTACAAAAGGGTTGCATGCTCCTTTGGGAACTCTATAACCTTTACCATCGACGATGGGGCCAACCCATTCTATTTTGCAACTGAAATAGAATATGAAAATGGGGATGGTGACCTTGTGGAGATTGAGCTGAAGCAAGCTAATTCTGACACATGGCTTCCAATGCAACGTTCATGGGGTTCAAGGTGGGCTTTGAACTTAGGTTCAAGGATGCAGCCACCATTCTCTATTAAGCTCACTGAAGATGGCAAGAACCAAAGGAGCACCATTGTGGCTGATAGTGTAATTCCATCCGGCTGGAAACCTGGTCAAGTTTATCGATCTGTTGTTAATTTTTAA 801 0.427 MKVLSYISFVVIVYSLLQNPSHGLNLKLFNSSKIENDDEWKVAAATWYGEPDGAGSDGGACGYVESVEKPPLSKMISAGGSSLYRGGRGCGACYQVKCTENTACSGNAVSVMITDECPGCFLGSVHFDLSGTAFGSMATPDKADNLRNVGELQILYKRVACSFGNSITFTIDDGANPFYFATEIEYENGDGDLVEIELKQANSDTWLPMQRSWGSRWALNLGSRMQPPFSIKLTEDGKNQRSTIVADSVIPSGWKPGQVYRSVVNF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun635g00011 266 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Phacun635g00011 266 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Phacun635g00011 266 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Phacun635g00011 266 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Phacun635g00011 266 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Phacun635g00011 266 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Phacun635g00011 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Phacun635g00011 266 SMART dpbb_1 76 156 IPR007112 -
Phacun635g00011 266 Gene3D - 163 266 IPR036749 -
Phacun635g00011 266 CDD DPBB_EXPB_N 40 161 - -
Phacun635g00011 266 Gene3D - 25 162 IPR036908 -
Phacun635g00011 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Phacun635g00011 266 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Phacun635g00011 266 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Phacun635g00011 266 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Phacun635g00011 266 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Phacun635g00011 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Phacun635g00011 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 262 IPR007117 -
Phacun635g00011 266 SUPERFAMILY PHL pollen allergen 166 262 IPR036749 -
Phacun635g00011 266 PANTHER EXPANSIN-B3 17 266 - -
Phacun635g00011 266 Pfam Lytic transglycolase 77 141 IPR009009 -
Phacun635g00011 266 SUPERFAMILY Barwin-like endoglucanases 38 163 IPR036908 -
Phacun635g00011 266 Pfam Expansin C-terminal domain 167 251 IPR007117 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun635g00011 19 266 Expansin Gene Family AT1G65680 55.336 2.01e-98 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun635g00011 - - var:108346495 466.848