Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun635g00010 ATGCAAGTTCTTAGTTACATCTCGTTTGTTGTAATACTTAGTTCCCTGTTCGTAAACCCTAGCCATGGTAACAAAACTAAAAGTGCATGGCAAAAAGGAGGAGCTACATGGTACGGAGAGCCAGAGGGTGCTGGATCTGATGGGGGTGCTTGTGGATATACTGACACTGTGAGGAAACCTCCACTCTCTAAAATGATCGTTGCTGGAGGTTCTACTCATTTTAAAAATGGAATAGGATGTGGAGCTTGTTTTGAGGTGAAATGCTCAGAAAACAAAGATTGTTCAGGAAAAGTAGTGAGAGTGATGGTCACTGATTTATGCCCTGGCGGTTTCGCAGGAGGAGTCCATCTTGATCTGAGTGGCACTGCATTTGGTGCCTTGGCAAAGCCAGGCAAAGCACACGAACTTCGTAATGCTGGAGAACTTAAAATTCACTACAAAAGGGTTCCATGCTCTTTTGGGAACTCTATTTCCTTTACCGTCGACAGTGGATCCAACCCATACTATTTTGCAACTGCAATACAATATCATAATGCGGATGGTGACCTTGTGAAGATTGAGCTGAAGCAAGCTAATACTAACAAATGGATTCCAATGAAACATTCATGGGGTGCAAAGTGGGCTTTGGACTTAGGTTCAAAGTTGCAACCTCCATTCTCCCTTAAGCTCACTCAAGATGGCACGATCAAAAAGAAAAGCATTGTGGCTCATAATGTAATTCCAGTTAAGTGGAAACCTGGTCAAGTTTATCGATCTGTTGTTAACTTTTAA 771 0.4241 MQVLSYISFVVILSSLFVNPSHGNKTKSAWQKGGATWYGEPEGAGSDGGACGYTDTVRKPPLSKMIVAGGSTHFKNGIGCGACFEVKCSENKDCSGKVVRVMVTDLCPGGFAGGVHLDLSGTAFGALAKPGKAHELRNAGELKIHYKRVPCSFGNSISFTVDSGSNPYYFATAIQYHNADGDLVKIELKQANTNKWIPMKHSWGAKWALDLGSKLQPPFSLKLTQDGTIKKKSIVAHNVIPVKWKPGQVYRSVVNF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun635g00010 256 SUPERFAMILY PHL pollen allergen 156 252 IPR036749 -
Phacun635g00010 256 Pfam Lytic transglycolase 67 146 IPR009009 -
Phacun635g00010 256 SUPERFAMILY Barwin-like endoglucanases 23 153 IPR036908 -
Phacun635g00010 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 156 IPR007112 -
Phacun635g00010 256 PANTHER EXPANSIN-B3 13 256 - -
Phacun635g00010 256 SMART dpbb_1 66 146 IPR007112 -
Phacun635g00010 256 Gene3D - 16 152 IPR036908 -
Phacun635g00010 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Phacun635g00010 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Phacun635g00010 256 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Phacun635g00010 256 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Phacun635g00010 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Phacun635g00010 256 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Phacun635g00010 256 PRINTS Major pollen allergen Lol pI signature 159 174 IPR005795 GO:0005576|GO:0019953
Phacun635g00010 256 PRINTS Major pollen allergen Lol pI signature 205 222 IPR005795 GO:0005576|GO:0019953
Phacun635g00010 256 PRINTS Major pollen allergen Lol pI signature 68 79 IPR005795 GO:0005576|GO:0019953
Phacun635g00010 256 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Phacun635g00010 256 PRINTS Major pollen allergen Lol pI signature 88 98 IPR005795 GO:0005576|GO:0019953
Phacun635g00010 256 PRINTS Major pollen allergen Lol pI signature 128 143 IPR005795 GO:0005576|GO:0019953
Phacun635g00010 256 CDD DPBB_EXPB_N 30 151 - -
Phacun635g00010 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 252 IPR007117 -
Phacun635g00010 256 Pfam Expansin C-terminal domain 157 241 IPR007117 -
Phacun635g00010 256 Gene3D - 153 256 IPR036749 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun635g00010 19 256 Expansin Gene Family AT1G65680 51.250 3.03e-85 253