Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun635g00008 ATGTGGACAACAACTCCATTCCCACACCCACAAAGTTCTCTCTTCTTTCCACCTCCAATTTCACAGCCCATGAAGTCCCAAAGTAAATTTCTGCTCAAATTTCATTCCTTTTACAGCTCAAAACTATGCCATCTATTACTCTTAATTGTGGAAGATGAATTCTTTGAATTGTATTATAGGTTGGGCTACAAAGTGGCATGCAAGAAGGGACAACCTTCGACCCCTGAAGACAGCCCTGGGAGGAACCAAACAACATGGGACATACCTCGTACAAGTGGAACCTTGGAGTCCATAGTGAACCATCGTATCGGCAAAAACTGCCACAAGTCAGTTACTAAGGACGCCTTAGTGCCCTGTTTTCCCAAACAGAGCACAATGTTTGGCGCGTGCAAAAAGGTTTACTCTAGGCGCGTGGACACTGGAGCTGGGGTGGTGGCGCGTGGTCCCACAACGCATGAGTTGAGTGGCGGCAAGGACTCGAATGTGAGTGGTAGTGACACTTATCCAAGGGAGTTGAGCGTGACTTTCAATTCAGACATCATGGGTTGCCCGGAAAACACCTGTAGCTCTGGTAAGCAGTGTACGGAGACCACTGCCATGGACGACCGTGATTCCGTAAGCCACCGTAGGTCGCAGAGTGAGGCAGGAGAAGAGGATTGCAAGAGAAGTGGAGTTGATAGATATTGTGAATCCAACAAAAGAATAAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAACTGGTCCCTAATTCCAGCAAGACCGATAAAGCTTCGATGTTGGATGAGGTGATCCAATATATGAAGCAACTGCAAGCACATTTGCAAATGATGAATTGGATGAAAATGTACTCGTCGATTATGCTGCCAATTGCCATGCAACAACAACAGCTTAAAATGTCGATGATGATGACTCAAATGGGCATTGGAATGAGAATGAGTAAGGAAATGACTATGAATATGAACAACATTAACATTCCCTCTATTCCTCCCATGCTCCACCTTCCTCCTTTCATGCCTATGGCTTCATGTGGTGATCAATTACTAGGAGAACCAGCAAAGTCAGTGACAGTGGATGCATACAGTAAGATGGCTGCTCTGTATAATCAGATGTATCATTCTCCATATTCTACCTCCAAGAAATGA 1188 0.4461 MWTTTPFPHPQSSLFFPPPISQPMKSQSKFLLKFHSFYSSKLCHLLLLIVEDEFFELYYRLGYKVACKKGQPSTPEDSPGRNQTTWDIPRTSGTLESIVNHRIGKNCHKSVTKDALVPCFPKQSTMFGACKKVYSRRVDTGAGVVARGPTTHELSGGKDSNVSGSDTYPRELSVTFNSDIMGCPENTCSSGKQCTETTAMDDRDSVSHRRSQSEAGEEDCKRSGVDRYCESNKRIKASAVHNQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAHLQMMNWMKMYSSIMLPIAMQQQQLKMSMMMTQMGIGMRMSKEMTMNMNNINIPSIPPMLHLPPFMPMASCGDQLLGEPAKSVTVDAYSKMAALYNQMYHSPYSTSKK* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun635g00008 395 MobiDBLite consensus disorder prediction 154 168 - -
Phacun635g00008 395 Pfam Helix-loop-helix DNA-binding domain 240 286 IPR011598 GO:0046983
Phacun635g00008 395 Coils Coil 242 262 - -
Phacun635g00008 395 MobiDBLite consensus disorder prediction 146 168 - -
Phacun635g00008 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 301 IPR036638 GO:0046983
Phacun635g00008 395 MobiDBLite consensus disorder prediction 197 223 - -
Phacun635g00008 395 MobiDBLite consensus disorder prediction 70 89 - -
Phacun635g00008 395 FunFam transcription factor UNE10 isoform X1 231 296 - -
Phacun635g00008 395 CDD bHLH_AtPIF_like 236 298 IPR047265 -
Phacun635g00008 395 Gene3D - 231 296 IPR036638 GO:0046983
Phacun635g00008 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983
Phacun635g00008 395 SMART finulus 242 291 IPR011598 GO:0046983
Phacun635g00008 395 MobiDBLite consensus disorder prediction 189 223 - -
Phacun635g00008 395 MobiDBLite consensus disorder prediction 75 89 - -
Phacun635g00008 395 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 124 388 IPR031066 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun635g00008 93 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 44.444 1.95e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phacun635g00008 HLH 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun635g00008 - - gmx:100820284 382.489