Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun635g00006 ATGAGCCAACGTGTCCCTTGCTGTGATGTGGACAACAACTCCATTCCCACACCCACAAAGTTCTCTCTTCTTTCCACCTCCAATTTCACAGCCCATGAAGTCCCAAAGTTGGGCTACAAAGTGGCATGCAAGAAGGGACAACCTTCGACCCCTGAAGACAGCCCTGGGAGGAACCAAACAACATGGGACATACCTCGTACAAGTGGAACCTTGGAGTCCATAGTGAACCATCGTATCGGCAAAAACTGCCACAAGTCAGTTACTAAGGACGCCTTAGTGCCCTGTTTTCCCAAACAGAGCACAATGTTTGGCGCGTGCAAAAAGGTTTACTCTAGGCGCGTGGACACTGGAGCTGGGGTGGTGGCGCGTGGTCCCACAACGCATGAGTTGAGTGGCGGCAAGGACTCGAATGTGAGTGGTAGTGACACTTATCCAAGGGAGTTGAGCGTGACTTTCAATTCAGACATCATGGGTTGCCCGGAAAACACCTGTAGCTCTGGTAAGCAGTGTACGGAGACCACTGCCATGGACGACCGTGATTCCGTAAGCCACCGTAGGTCGCAGAGTGAGGCAGGAGAAGAGGATTGCAAGAGAAGTGGAGTTGATAGATATTGTGAATCCAACAAAAGAATAAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAACTGGTCCCTAATTCCAGCAAGACCGATAAAGCTTCGATGTTGGATGAGGTGATCCAATATATGAAGCAACTGCAAGCACATTTGCAAATGATGAATTGGATGAAAATGTACTCGTCGATTATGCTGCCAATTGCCATGCAACAACAACAGCTTAAAATGTCGATGATGATGACTCAAATGGGCATTGGAATGAGAATGAGTAAGGAAATGACTATGAATATGAACAACATTAACATTCCCTCTATTCCTCCCATGCTCCACCTTCCTCCTTTCATGCCTATGGCTTCATGTGGTGATCAATTACTAGGAGAACCAGCAAAGTCAGTGACAGTGGATGCATACAGTAAGATGGCTGCTCTGTATAATCAGATGTATCATTCTCCATATTCTACCTCCAAGAAATGA 1116 0.4624 MSQRVPCCDVDNNSIPTPTKFSLLSTSNFTAHEVPKLGYKVACKKGQPSTPEDSPGRNQTTWDIPRTSGTLESIVNHRIGKNCHKSVTKDALVPCFPKQSTMFGACKKVYSRRVDTGAGVVARGPTTHELSGGKDSNVSGSDTYPRELSVTFNSDIMGCPENTCSSGKQCTETTAMDDRDSVSHRRSQSEAGEEDCKRSGVDRYCESNKRIKASAVHNQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAHLQMMNWMKMYSSIMLPIAMQQQQLKMSMMMTQMGIGMRMSKEMTMNMNNINIPSIPPMLHLPPFMPMASCGDQLLGEPAKSVTVDAYSKMAALYNQMYHSPYSTSKK* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun635g00006 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 261 IPR011598 GO:0046983
Phacun635g00006 371 Gene3D - 207 272 IPR036638 GO:0046983
Phacun635g00006 371 Coils Coil 218 238 - -
Phacun635g00006 371 MobiDBLite consensus disorder prediction 122 143 - -
Phacun635g00006 371 Pfam Helix-loop-helix DNA-binding domain 216 262 IPR011598 GO:0046983
Phacun635g00006 371 MobiDBLite consensus disorder prediction 43 65 - -
Phacun635g00006 371 MobiDBLite consensus disorder prediction 173 199 - -
Phacun635g00006 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 277 IPR036638 GO:0046983
Phacun635g00006 371 CDD bHLH_AtPIF_like 212 274 IPR047265 -
Phacun635g00006 371 SMART finulus 218 267 IPR011598 GO:0046983
Phacun635g00006 371 MobiDBLite consensus disorder prediction 51 65 - -
Phacun635g00006 371 MobiDBLite consensus disorder prediction 165 199 - -
Phacun635g00006 371 FunFam transcription factor UNE10 isoform X1 207 272 - -
Phacun635g00006 371 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 158 364 IPR031066 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun635g00006 1 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.042 2.45e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phacun635g00006 HLH 1.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun635g00006 - - gmx:100788617 427.557