Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun597g00001 ATGGATGAAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAAGGAGAGAAAATATAGATTCTCATTACTTACTACATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCTATTCATATGGGTTTTTCTATTTCATCTAGTTTGGCTCATAGTTTTTCAGATGTTCCTTGGTTGGGTGAACATGACAGTGATATGCAGTTGGACATTGAGGACATGTCATATGAAGAGCTTCTTGAATTAGGTGAACGGATTGTCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAG 558 0.3763 MDEMSEGNIFWPNMCRVARRENIDSHYLLHAYDNGMVYGRRAFNGVQHQPIHMGFSISSSLAHSFSDVPWLGEHDSDMQLDIEDMSYEELLELGERIVNVGTGLLDEIIARQMKTKTYLLPNNSGEVASEEQENDLCIICQDEYKNKQEIGILQCGHGYHADCIRTWLHEKNVCPLCKSEALTLG* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun597g00001 185 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Phacun597g00001 185 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 43 182 IPR045191 GO:0061630
Phacun597g00001 185 SUPERFAMILY RING/U-box 131 181 - -
Phacun597g00001 185 Pfam Ring finger domain 136 178 IPR001841 -
Phacun597g00001 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 182 IPR013083 -
Phacun597g00001 185 CDD RING-H2_RNF24-like 135 181 - -
Phacun597g00001 185 SMART ring_2 137 177 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun597g00001 77 182 C3H Transcription Factor Family AT2G15530 47.170 3.45e-28 108