Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun50g00003 ATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGAGCTCGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAGGAATTGTGGCAGACAAATCCTGATGCTTCCTTTGAGGATCTTGAGAAGCCTGGTGTCGATGATGAACCTCAGTCCGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCTGATTATGATAAGGAGGATAATGAGTTGCGGCTTGTACTTGGTGACGAGTTACGATTGCGTTATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCAAGTCAGAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTTGTATATCACATGGCCAAGCAAGGCCAGGGACAGGTTTTGGTTTGTGCACCCAGTAATGTAGCTGTTGACCAGCTAGCTGAAAAGATTAGTGCTACTGGATTAAAGTTTTACATCTGTTGGGGATTAAGTAGAAACTGTGCCTTTTTTGCTTTTCAATGTGAACTTTCCAGTAGTGATGAGAAAAAATACAAAGCTCTTAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCAGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAACTTTAGGTTCCGTCAGGTGCTTATTGACGAGTCTACTCAAGCAACTGAACCCGAGTGCCTCATACCTTTGGTCCTAGGAGCAAAGCAGGTTGTTCTTGTTGGCGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCCCGTGCTGGATTAGCACAGTCACTTTTTGAATTCCTGTTCGGGCTAAACACAAGGAAGTCTGTCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAATAGTGGATGTCGACATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGACAAATCCTGATGCTTCCTTTGAGGATCTTGAGAAGCCTGGTGTCGATGATGAACCTCAGTCCGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAAGGTATTTGCACCTCTTATTAAGCTTGAAGTTGATTATGATAAGGAGGATAATGAGTTGCGGCTTGTACCTCGTGACGAGTTACGATTGCGTTATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCAAGTCAGGGGGTTCCTGTTGATGTTAACCATGGGTTCAGTGTTGATTTTGTTTGGAAAAGTACAAGCTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTTGATGAGACAAGTGTTAGTGGGTAA 1551 0.4423 MNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWQTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKEDNELRLVLGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKFYICWGLSRNCAFFAFQCELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFEFLFGLNTRKSVYTKIVRWEKQFLNATIVDVDMNWDLSQWCPLIDDRCFLQWLVKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQKVFAPLIKLEVDYDKEDNELRLVPRDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSG* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun50g00003 516 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 1 51 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Phacun50g00003 516 Pfam AAA domain 229 310 IPR041677 GO:0004386
Phacun50g00003 516 Pfam AAA domain 142 202 IPR041677 GO:0004386
Phacun50g00003 516 Pfam RNA helicase (UPF2 interacting domain) 354 382 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Phacun50g00003 516 Pfam RNA helicase (UPF2 interacting domain) 1 51 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Phacun50g00003 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 337 IPR027417 -
Phacun50g00003 516 Pfam RNA helicase UPF1, 1B domain 98 146 IPR040812 -
Phacun50g00003 516 Pfam RNA helicase UPF1, 1B domain 428 491 IPR040812 -
Phacun50g00003 516 CDD DEXXQc_UPF1 141 333 - -
Phacun50g00003 516 Gene3D - 70 337 IPR027417 -
Phacun50g00003 516 CDD 1B_UPF1-like 98 148 IPR040812 -
Phacun50g00003 516 Gene3D - 422 491 - -
Phacun50g00003 516 PANTHER DNA2/NAM7 HELICASE FAMILY 144 327 IPR045055 -
Phacun50g00003 516 CDD 1B_UPF1-like 428 490 IPR040812 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun50g00003 154 283 Core DNA Replication Machinery Family AT1G08840 31.579 2.24e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun50g00003 K14326 - vum:124819708 303.138