Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00168 ATGCCTGGAATGACTTCAAAACTTAACCAAGGAGATGACTCTCATGGGGGTAGTGCCTCAAGGCCAATCCACTTTTTCAGGATCATGCTCTCCCACAACCTTCTGCATGGAAAACTAAGGCTTCCATCAAAGTTTGTGAGCAAATATGGAAATCACCTACCCAACACAATATTTCTTAAGCTTCCAAATGATGCAGAATGGGAAGTAAAATTGGAGAAAAGTGATGGCAGTGTTTGGTTTCAGAAAGGTTGGAAAGAGTTTGTGGAGTATCACTGTCTAGTTCATGGACACCTTTTGGTTTTCAGATACAATGGAACATCGCATTTCCATGTACTCATCTGTGATATGAGTTGCATGGAAATAGACTACCCTGTCAACAAAGCAAATCAGAAAAGGGTCAGAATTAATAGTGAAGACATTCAACCACCTAAGACACAGAAACCAACACAGAATGAGAAAAGGTCCGATGAAGAAGTCAGAGACCACAAAGGTATTTTGAAGAATCTAAATGAAGGGAAGAGAAAGATGGAAGCTGTTGGGAATACTTCCTTCATGGTGATACTGAAACCTAGCAACTTAATTACGGGGTATATGGTCCCAGTGAGGAGCTACATCAAACGTCGTGAACAATATGTTACTCTTCTTGTTGGGGACAGATCATGGAAGGTTAAATTGATCCATTATCGAAATAATACAGCTTACTTCACAAATTTCTTAGATTTTGCAAGGGAAAACGATTTAAAAGAAGGAGATGCTTGCTTTTTCCAACTCATAAACATGGGTGATGACATGGTGTTTAGGGCTACCTTTTGTAAACAGACACTCCTCTCCTCTCGAGTACTAAAAGGCCAATAA 855 0.3977 MPGMTSKLNQGDDSHGGSASRPIHFFRIMLSHNLLHGKLRLPSKFVSKYGNHLPNTIFLKLPNDAEWEVKLEKSDGSVWFQKGWKEFVEYHCLVHGHLLVFRYNGTSHFHVLICDMSCMEIDYPVNKANQKRVRINSEDIQPPKTQKPTQNEKRSDEEVRDHKGILKNLNEGKRKMEAVGNTSFMVILKPSNLITGYMVPVRSYIKRREQYVTLLVGDRSWKVKLIHYRNNTAYFTNFLDFARENDLKEGDACFFQLINMGDDMVFRATFCKQTLLSSRVLKGQ* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00168 284 Gene3D - 167 274 IPR015300 -
Phacun42g00168 284 CDD B3_DNA 24 115 IPR003340 GO:0003677
Phacun42g00168 284 SMART B3_2 25 117 IPR003340 GO:0003677
Phacun42g00168 284 SMART B3_2 184 274 IPR003340 GO:0003677
Phacun42g00168 284 MobiDBLite consensus disorder prediction 149 163 - -
Phacun42g00168 284 Pfam B3 DNA binding domain 204 265 IPR003340 GO:0003677
Phacun42g00168 284 Pfam B3 DNA binding domain 28 115 IPR003340 GO:0003677
Phacun42g00168 284 SUPERFAMILY DNA-binding pseudobarrel domain 20 117 IPR015300 -
Phacun42g00168 284 SUPERFAMILY DNA-binding pseudobarrel domain 180 265 IPR015300 -
Phacun42g00168 284 MobiDBLite consensus disorder prediction 133 163 - -
Phacun42g00168 284 CDD B3_DNA 183 272 IPR003340 GO:0003677
Phacun42g00168 284 PANTHER B3 DOMAIN-CONTAINING 18 260 - -
Phacun42g00168 284 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Phacun42g00168 284 Gene3D - 18 118 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00168 25 141 B3 DNA Binding Superfamily AT1G49475 34.188 1.04e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phacun42g00168 B3 2.9e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00168 - - vum:124844820 374.785