Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00167 ATGCCTGGAATGACTTCAAAACTTAACCAAGGAGATGACTCTCATGGGGGTAGTGCCTCAAGGCCAATCCACTTTTTCAGGATCATGCTCTCCCACAACCTTCTGCATGGAAAACTAAGGCTTCCATCAAAGTTTGTGAGCAAATATGGAAATCACCTACCCAACACAATATTTCTTAAGCTTCCAAATGATGCAGAATGGGAAGTAAAATTGGAGAAAAGTGATGGCAGTGTTTGGTTTCAGAAAGGTTGGAAAGAGTTTGTGGAGTATCACTGTCTAGTTCATGGACACCTTTTGGTTTTCAGATACAATGGAACATCGCATTTCCATGTACTCATCTGTGATATGAGTTGCATGGAAATAGACTACCCTGTCAACAAAGCAAATCAGAAAAGGGTCAGAATTAATAGTGAAGACATTCAACCACCTAAGACACAGAAACCAACACAGAATGAGAAAAGGTCCGATGAAGAAGTCAGAGACCACAAAGGTATTTTGAAGAATCTAAATGAAGGGAAGAGAAAGATGGAAGCTGTTGGGAATACTTCCTTCATGGTGATACTGAAACCTAGCAACTTAATTACGGGGTATATGTATCTGCCAAAGGTCCCAGTGAGGAGCTACATCAAACGTCGTGAACAATATGTTACTCTTCTTGTTGGGGACAGATCATGGAAGGTTAAATTGATCCATTATCGAAATAATACAGCTTACTTCACAAATTTCTTAGATTTTGCAAGGGAAAACGATTTAAAAGAAGGAGATGCTTGCTTTTTCCAACTCATAAACATGGGTGATGACATGGTGTTTAGGGCTACCTTTTGTAAACAGACACTCCTCTCCTCTCGAGTACTAAAAGGCCAATAA 867 0.3979 MPGMTSKLNQGDDSHGGSASRPIHFFRIMLSHNLLHGKLRLPSKFVSKYGNHLPNTIFLKLPNDAEWEVKLEKSDGSVWFQKGWKEFVEYHCLVHGHLLVFRYNGTSHFHVLICDMSCMEIDYPVNKANQKRVRINSEDIQPPKTQKPTQNEKRSDEEVRDHKGILKNLNEGKRKMEAVGNTSFMVILKPSNLITGYMYLPKVPVRSYIKRREQYVTLLVGDRSWKVKLIHYRNNTAYFTNFLDFARENDLKEGDACFFQLINMGDDMVFRATFCKQTLLSSRVLKGQ* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00167 288 CDD B3_DNA 24 115 IPR003340 GO:0003677
Phacun42g00167 288 MobiDBLite consensus disorder prediction 149 163 - -
Phacun42g00167 288 Gene3D - 167 278 IPR015300 -
Phacun42g00167 288 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Phacun42g00167 288 SMART B3_2 25 117 IPR003340 GO:0003677
Phacun42g00167 288 SMART B3_2 184 278 IPR003340 GO:0003677
Phacun42g00167 288 SUPERFAMILY DNA-binding pseudobarrel domain 180 269 IPR015300 -
Phacun42g00167 288 ProSiteProfiles B3 DNA-binding domain profile. 183 278 IPR003340 GO:0003677
Phacun42g00167 288 CDD B3_DNA 183 276 IPR003340 GO:0003677
Phacun42g00167 288 SUPERFAMILY DNA-binding pseudobarrel domain 20 117 IPR015300 -
Phacun42g00167 288 MobiDBLite consensus disorder prediction 133 163 - -
Phacun42g00167 288 Pfam B3 DNA binding domain 28 115 IPR003340 GO:0003677
Phacun42g00167 288 Pfam B3 DNA binding domain 186 269 IPR003340 GO:0003677
Phacun42g00167 288 Gene3D - 18 118 IPR015300 -
Phacun42g00167 288 PANTHER B3 DOMAIN-CONTAINING 18 264 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00167 25 141 B3 DNA Binding Superfamily AT1G49475 34.188 1.14e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phacun42g00167 B3 1.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00167 - - vum:124844820 388.267