Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00158 ATGTGCTCTTCACTCATTCTCTGTTCCTCTCTAATCAAACCCCACCCTCTCTCTTTCTTCCTTGGGAAACATATCAACATGGAAAGTGATGCTGGGGAAAACTTGTTTGGCACATTCTTCTCCTCCTCCACATCCATGACCATCTCCATAACAACCCACACCATCTCATCATCATCGTCATCATCAGCAGCAGCATCACCAACATCTTCTACCTCAAGCTCAAACTCATGCACCAAGCATGACTCCCAAACAAGTCCTCCAGATGATTCAACAAGACCTCAAAATAAAAACACCCCAAATAGCAAGGAACGGAAGAAAAGACAAAGAAATGGCAATGATAACAAGCACCCCAGTTACAGGGGTGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATACGTGAGCCTAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCTACAGCCGAAATGGCAGCCAGAGCACACGATGTGGCAACTTTAGCCATCAAGGGTCACTCAGCTTACCTCAATTTCCCCAATTTGGCTCAAGATCTTCCAAGGCCCATCACCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAGCACTTTCTTTGATGATGATAAGCATTGTGAAGCTGAAAAAGATGAAGAAAACCATGCAGAACAAGCTTCATCTTCAACTCTACGCATGGACAGTACTGAGGCAGAGCACGTTCAAGCAAAACAAGCTTCATCTTCTACTCTATCAATGGACAATACTCAAGGGTCTTCAACTTCTCACTCTACTGCAGATGATGACACACTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACAATGGACTTTTCTCCAATTCTTCTTCTTGGCGCTTATGTGCTGTTGATAGTGGGTTCAGGCTTGAAGAGCAACTTTTGTGGGAGAATTATTAG 930 0.4452 MCSSLILCSSLIKPHPLSFFLGKHINMESDAGENLFGTFFSSSTSMTISITTHTISSSSSSSAAASPTSSTSSSNSCTKHDSQTSPPDDSTRPQNKNTPNSKERKKRQRNGNDNKHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVATLAIKGHSAYLNFPNLAQDLPRPITTSPKDIQAAAAKAASTFFDDDKHCEAEKDEENHAEQASSSTLRMDSTEAEHVQAKQASSSTLSMDNTQGSSTSHSTADDDTLFDLPDLFPDGNNGLFSNSSSWRLCAVDSGFRLEEQLLWENY* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00158 309 MobiDBLite consensus disorder prediction 55 97 - -
Phacun42g00158 309 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 86 275 - -
Phacun42g00158 309 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Phacun42g00158 309 CDD AP2 117 177 IPR001471 GO:0003700|GO:0006355
Phacun42g00158 309 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Phacun42g00158 309 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Phacun42g00158 309 MobiDBLite consensus disorder prediction 98 120 - -
Phacun42g00158 309 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Phacun42g00158 309 MobiDBLite consensus disorder prediction 212 264 - -
Phacun42g00158 309 MobiDBLite consensus disorder prediction 55 121 - -
Phacun42g00158 309 Gene3D AP2/ERF domain 118 176 IPR036955 GO:0003700|GO:0006355
Phacun42g00158 309 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Phacun42g00158 309 Pfam AP2 domain 117 168 IPR001471 GO:0003700|GO:0006355
Phacun42g00158 309 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Phacun42g00158 309 MobiDBLite consensus disorder prediction 223 264 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00158 105 305 AP2-EREBP Transcription Factor Family AT2G44940 52.074 1.21e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Phacun42g00158 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00158 - - pvu:PHAVU_008G141000g 531.561