Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00155 ATGGGGAGTATGAGTGACTCAGACCGAAAACGACGTCACTTTAGCTCCTTGTCTCCAACACCTGCAGCTGCTACTGCCAAGAAGCTACCCTTCTTGCCCGTTTCTGAAGACAAAAAGCTTGATATTGTTGTACTTCAGTATCAAAATCAAAAGCTTATACAAAAATTAGAAACTCAGAAGTTAGAGTATGCAGCTCTTGAGAATAGGTTTACTCAACAGAAGGATAGGCAAAAGTCATATGATCCCACTTTATCAGTGGTCAAGAAATCTTGGGAGCAGATGGTTAATGATTTGGAGTTGTGTTCTGAACAAATGAGAGAGTCACGTGGCAATAGATTTGCATCAATCATGAAAGATGGTGGTCCATCAACTGTTCAAGGGGAACTGGCTAGCGCTGTTGCAGAGTTAGAAGAAAGCAATCACAAACTTGCAGCTCTTAAGGCTGAGAGAGATGCTGCAAAAGGGGCAGTTCTCCCTGTCTTAAATGTTGGCAGTACGCATATTCCTAGTGATAAGATCAGAGACAAGCAAAAGGACTTGCAAGATATGGAATCTGCTTTGAAGGATCTACTGGACCAAGGTTCTACTCGATTAATGGAACTGAAAAGTCTTCATGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATCTACAGAACACTTTGAAGAATTTCAAGTGTATTACTTCATCCCATGCTTACCAATTGGCTAGAGATCAGATAGAAAAGTCAAAATCAGATGTTCTGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGAAAAGGATAATCTTACATGGAGGGAGCGGGAGTGGTACATTAAAAATGATTTAGCAGATATTTTTCAAAGATCTGTGGCTGTTTCAGATTTTAGAGTGGCTGATCTACACTCTGAGATACAGAAAAAGATAGAGGAAGGAAATATGATTGAAAATAAGCTGAAAGAAGAAGCAAGAGAGCCAGGAAGGAAACAAATTATTGCTGAATTTAAATCTCTGGTTTCTTCGTTTCCTGAAGAAATGGGGTCTATGCAAAGCCAACTAAGAAAATATAAAGAATCAGCTTCAGACATCCATTCTTTGCGTGCAGATGTGCAGTCTGTTTCTAATATTCTTGACAGGAAGGTAAAAGAATGTGATGCATTTTCTGTTAGGTCTGCCAGTCAACTTGCTGAGATAAAGAGGCTGCTTGGTGTGTTTCAAGATTTGAAAGAAAGTGAACTGGACTTGAAGTTGACGTTAGAAATGTTTAGACGTGAGTCCATTGATTCAAGGGATGTCATGGATGCACGGGAAGCAGAATATAGAGCCTGGGCACATGTTCAAAGTTTGAAATCATCACTTGATGAGCACAACTTGGAACTTCGAGTTAAGAAAGCCAATGAAGCAGAGGCCAGATCACAACAAAAGCTGGCTGCTGGCGAAGCTGAGATTGCGGACATGAGACAGAAATTAGAAGATTCTAAAAGGAAAATGTGTGATCTGTCGGATGTCTTGAAATCTAAGAACAAACAAAATGAGAACTACTTATCTGAAATAGAGAGTATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACATCTGCTGCAGCAAATTACTGAAAGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTACGGGCAAGGCAGAAGCAGGATTCTTTGCTCATGGAGAAGCGGGTAATTGAACAAGATATCCAGCAAACAAACACATCCCTGAATTTATATGATATGAAAGCTGCAAGAATTGAAGACCAGTTGAAGTTTTGTTCGGATCAGCTTCAAAGAATTTCAGACGATAAGTTTCAATGTTCTGTCACTTCAGAAAACACACAAAGAAGGCTGTCTGATATTAGAAAACAAACTCAACAGATTAGGGATACAGTGGTCGAAATGCAATCAAAAATTGGTAGTAATAGGGTGACGCGAATGGAGTTACAAGTTGAACTTGAGAAAGAAAGGTTTGCCAAAAAAAGAATTGAGGAGGATCTGGAGGTTTCTAGGAGAAAGTTTTCACGCCTTAAAGAACAAAATGAGGGCTCTTCAATAACTGAAAAGCTTCATCAGGAACTTGAAGAGTACAGGGAAATTATCAAGTGCAGTATCTGTCACGATAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTACTCATGTATCCAGAAAGTTGCTGGGAGTAGGCATCGCAAGTGCCCACAGTGTGCTACAAGCTTTGGCGCTAATGATGTGAAGTCTGTTTATTTGTAA 2268 0.3959 MGSMSDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLIQKLETQKLEYAALENRFTQQKDRQKSYDPTLSVVKKSWEQMVNDLELCSEQMRESRGNRFASIMKDGGPSTVQGELASAVAELEESNHKLAALKAERDAAKGAVLPVLNVGSTHIPSDKIRDKQKDLQDMESALKDLLDQGSTRLMELKSLHEERIRILQQLCDLQNTLKNFKCITSSHAYQLARDQIEKSKSDVLEYQALYEKLQVEKDNLTWREREWYIKNDLADIFQRSVAVSDFRVADLHSEIQKKIEEGNMIENKLKEEAREPGRKQIIAEFKSLVSSFPEEMGSMQSQLRKYKESASDIHSLRADVQSVSNILDRKVKECDAFSVRSASQLAEIKRLLGVFQDLKESELDLKLTLEMFRRESIDSRDVMDAREAEYRAWAHVQSLKSSLDEHNLELRVKKANEAEARSQQKLAAGEAEIADMRQKLEDSKRKMCDLSDVLKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKRVIEQDIQQTNTSLNLYDMKAARIEDQLKFCSDQLQRISDDKFQCSVTSENTQRRLSDIRKQTQQIRDTVVEMQSKIGSNRVTRMELQVELEKERFAKKRIEEDLEVSRRKFSRLKEQNEGSSITEKLHQELEEYREIIKCSICHDRAKEVVITKCYHLFCYSCIQKVAGSRHRKCPQCATSFGANDVKSVYL* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00155 755 PANTHER RING FINGER PROTEIN-RELATED 1 107 IPR013956 GO:0004842|GO:0010390
Phacun42g00155 755 Coils Coil 471 491 - -
Phacun42g00155 755 FunFam E3 ubiquitin protein ligase 684 755 - -
Phacun42g00155 755 MobiDBLite consensus disorder prediction 1 15 - -
Phacun42g00155 755 SMART ring_2 703 741 IPR001841 -
Phacun42g00155 755 ProSitePatterns Zinc finger RING-type signature. 718 727 IPR017907 -
Phacun42g00155 755 Coils Coil 441 461 - -
Phacun42g00155 755 Pfam Zinc finger, C3HC4 type (RING finger) 702 743 - -
Phacun42g00155 755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 755 IPR013083 -
Phacun42g00155 755 ProSiteProfiles Zinc finger RING-type profile. 703 741 IPR001841 -
Phacun42g00155 755 Coils Coil 49 76 - -
Phacun42g00155 755 SUPERFAMILY RING/U-box 695 753 - -
Phacun42g00155 755 Coils Coil 646 680 - -
Phacun42g00155 755 MobiDBLite consensus disorder prediction 1 28 - -
Phacun42g00155 755 Coils Coil 173 193 - -
Phacun42g00155 755 Coils Coil 583 603 - -
Phacun42g00155 755 Coils Coil 129 156 - -
Phacun42g00155 755 Coils Coil 241 261 - -
Phacun42g00155 755 CDD RING-HC_Bre1-like 695 753 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00155 703 754 C3H Transcription Factor Family AT2G42030 37.736 4.75e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00155 K10696 - gmx:100790337 1087.4