Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00154 ATGGGGAGTATGAGTGACTCAGACCGAAAACGACGTCACTTTAGCTCCTTGTCTCCAACACCTGCAGCTGCTACTGCCAAGAAGCTACCCTTCTTGCCCGTTTCTGAAGACAAAAAGCTTGATATTGTTGTACTTCAGTATCAAAATCAAAAGCTTATACAAAAATTAGAAACTCAGAAGTTAGAGTATGCAGCTCTTGAGAATAGGTTTACTCAACAGAAGGATAGGCAAAAGTCATATGATCCCACTTTATCAGTGGTCAAGAAATCTTGGGAGCAGATGGTTAATGATTTGGAGTTGTGTTCTGAACAAATGAGAGAGTCACGTGGCAATAGATTTGCATCAATCATGAAAGATGGTGGTCCATCAACTGTTCAAGGTGTGTTTCTTAGCCGTCTAATGCAAACTAGTGCAACTGAATGTGCAACTGCATATAGCTATGCAAACCAGATGGAAGAGCATCGAGAAATTATTGCTGAAAAAACTAAAAACATTTTAAAGAATATGGCAACAGCTGTTAATAATCTTTGGGTTCTGATGGATGGATTGCATACTGAATTACTGAAAAAGGTTCCTGTAGATGATTTTTGTAGGCAGAAATTGTCCTCTGATCTAGATGTGAAAGTTAAAAACTTGAGATTGGAATTCAGTGAACTTCATTTAAAGCACAAGTCTCTATCAAGTGAATTCCAAATTCAGCGAGATATTGATGCCAAAAATAAAGCTGACCTTGAAAGATTAAAAGGGGAACTGGCTAGCGCTGTTGCAGAGTTAGAAGAAAGCAATCACAAACTTGCAGCTCTTAAGGCTGAGAGAGATGCTGCAAAAGGGGCAGTTCTCCCTGTCTTAAATGTTGGCAGTACGCATATTCCTAGTGATAAGATCAGAGACAAGCAAAAGGACTTGCAAGATATGGAATCTGCTTTGAAGGATCTACTGGACCAAGGTTCTACTCGATTAATGGAACTGAAAAGTCTTCATGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATCTACAGAACACTTTGAAGAATTTCAAGTGTATTACTTCATCCCATGCTTACCAATTGGCTAGAGATCAGATAGAAAAGTCAAAATCAGATGTTCTGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGAAAAGGATAATCTTACATGGAGGGAGCGGGAGTGGTACATTAAAAATGATTTAGCAGATATTTTTCAAAGATCTGTGGCTGTTTCAGATTTTAGAGTGGCTGATCTACACTCTGAGATACAGAAAAAGATAGAGGAAGGAAATATGATTGAAAATAAGCTGAAAGAAGAAGCAAGAGAGCCAGGAAGGAAACAAATTATTGCTGAATTTAAATCTCTGGTTTCTTCGTTTCCTGAAGAAATGGGGTCTATGCAAAGCCAACTAAGAAAATATAAAGAATCAGCTTCAGACATCCATTCTTTGCGTGCAGATGTGCAGTCTGTTTCTAATATTCTTGACAGGAAGGTAAAAGAATGTGATGCATTTTCTGTTAGGTCTGCCAGTCAACTTGCTGAGATAAAGAGGCTGCTTGGTGTGTTTCAAGATTTGAAAGAAAGTGAACTGGACTTGAAGTTGACGTTAGAAATGTTTAGACGTGAGTCCATTGATTCAAGGGATGTCATGGATGCACGGGAAGCAGAATATAGAGCCTGGGCACATGTTCAAAGTTTGAAATCATCACTTGATGAGCACAACTTGGAACTTCGAGTTAAGAAAGCCAATGAAGCAGAGGCCAGATCACAACAAAAGCTGGCTGCTGGCGAAGCTGAGATTGCGGACATGAGACAGAAATTAGAAGATTCTAAAAGGAAAATGTGTGATCTGTCGGATGTCTTGAAATCTAAGAACAAACAAAATGAGAACTACTTATCTGAAATAGAGAGTATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACATCTGCTGCAGCAAATTACTGAAAGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTACGGGCAAGGCAGAAGCAGGATTCTTTGCTCATGGAGAAGCGGGTAATTGAACAAGATATCCAGCAAACAAACACATCCCTGAATTTATATGATATGAAAGCTGCAAGAATTGAAGACCAGTTGAAGTTTTGTTCGGATCAGCTTCAAAGAATTTCAGACGATAAGTTTCAATGTTCTGTCACTTCAGAAAACACACAAAGAAGGCTGTCTGATATTAGAAAACAAACTCAACAGATTAGGGATACAGTGGTCGAAATGCAATCAAAAATTGGTAGTAATAGGGTGACGCGAATGGAGTTACAAGTTGAACTTGAGAAAGAAAGGTTTGCCAAAAAAAGAATTGAGGAGGATCTGGAGGTTTCTAGGAGAAAGTTTTCACGCCTTAAAGAACAAAATGAGGGCTCTTCAATAACTGAAAAGCTTCATCAGGAACTTGAAGAGTACAGGGAAATTATCAAGTGCAGTATCTGTCACGATAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTACTCATGTATCCAGAAAGTTGCTGGGAGTAGGCATCGCAAGTGCCCACAGTGTGCTACAAGCTTTGGCGCTAATGATGTGAAGTCTGTTTATTTGTAA 2634 0.3891 MGSMSDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLIQKLETQKLEYAALENRFTQQKDRQKSYDPTLSVVKKSWEQMVNDLELCSEQMRESRGNRFASIMKDGGPSTVQGVFLSRLMQTSATECATAYSYANQMEEHREIIAEKTKNILKNMATAVNNLWVLMDGLHTELLKKVPVDDFCRQKLSSDLDVKVKNLRLEFSELHLKHKSLSSEFQIQRDIDAKNKADLERLKGELASAVAELEESNHKLAALKAERDAAKGAVLPVLNVGSTHIPSDKIRDKQKDLQDMESALKDLLDQGSTRLMELKSLHEERIRILQQLCDLQNTLKNFKCITSSHAYQLARDQIEKSKSDVLEYQALYEKLQVEKDNLTWREREWYIKNDLADIFQRSVAVSDFRVADLHSEIQKKIEEGNMIENKLKEEAREPGRKQIIAEFKSLVSSFPEEMGSMQSQLRKYKESASDIHSLRADVQSVSNILDRKVKECDAFSVRSASQLAEIKRLLGVFQDLKESELDLKLTLEMFRRESIDSRDVMDAREAEYRAWAHVQSLKSSLDEHNLELRVKKANEAEARSQQKLAAGEAEIADMRQKLEDSKRKMCDLSDVLKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKRVIEQDIQQTNTSLNLYDMKAARIEDQLKFCSDQLQRISDDKFQCSVTSENTQRRLSDIRKQTQQIRDTVVEMQSKIGSNRVTRMELQVELEKERFAKKRIEEDLEVSRRKFSRLKEQNEGSSITEKLHQELEEYREIIKCSICHDRAKEVVITKCYHLFCYSCIQKVAGSRHRKCPQCATSFGANDVKSVYL* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00154 877 MobiDBLite consensus disorder prediction 1 15 - -
Phacun42g00154 877 SUPERFAMILY RING/U-box 817 875 - -
Phacun42g00154 877 Coils Coil 768 802 - -
Phacun42g00154 877 CDD RING-HC_Bre1-like 817 875 - -
Phacun42g00154 877 SMART ring_2 825 863 IPR001841 -
Phacun42g00154 877 Coils Coil 363 383 - -
Phacun42g00154 877 MobiDBLite consensus disorder prediction 1 22 - -
Phacun42g00154 877 Coils Coil 295 315 - -
Phacun42g00154 877 PANTHER RING FINGER PROTEIN-RELATED 1 877 IPR013956 GO:0004842|GO:0010390
Phacun42g00154 877 Coils Coil 705 725 - -
Phacun42g00154 877 Coils Coil 593 613 - -
Phacun42g00154 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 806 877 IPR013083 -
Phacun42g00154 877 ProSitePatterns Zinc finger RING-type signature. 840 849 IPR017907 -
Phacun42g00154 877 Pfam Zinc finger, C3HC4 type (RING finger) 824 865 - -
Phacun42g00154 877 ProSiteProfiles Zinc finger RING-type profile. 825 863 IPR001841 -
Phacun42g00154 877 Coils Coil 49 76 - -
Phacun42g00154 877 Coils Coil 241 278 - -
Phacun42g00154 877 Coils Coil 563 583 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00154 825 876 C3H Transcription Factor Family AT2G42030 37.736 6.45e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00154 K10696 - gmx:100790337 1465.29