Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00118 ATGGTGTTCCTCTTTCCGATGCTTCTGTCCATGAAGCTCCAACCTTTATGGCTTCTTCTTTGGAAAGCCAGCCTTGACAACCACAGTCAAGCTTCTCTCTCTTCATGGAATGGCAATAATCCTTGCAACTGGCTGGGAATTGCATGTGATGATTCCAATTCTGTTTCTGACATAAATCTTATACGTCTTGGATTAAAAGGTACACTTCAAACTTTTAACTTCTCATTACTTCCAAACATTCTCAATCTCAATATCAGTTACAACTCCTTGTCTGGAAGTATTCCTCCACAAATTCAACACTTGTCCAATCTCAGTACACTTGATTTGTCTACCAATAAACTCTCTGGTGCCATTCCCAATACCATCTGTAATCTCTCCAAACTCAAATATCTCAATCTTAGTGTCAATGCTCTTTCTGGTCCTATTCCTAATGAAGTTGGCAATCTCCACTCTCTTCTCACATTCGATATATTTGCCAACAACCTCTCTGGACCAATCCCTCCTTCCTTAGGTACCTTGCCCCTTTTGGAATCCATTCACCTTTTTGAAAATAAACTCAATGGTTCCATTCCTTCCACTCTTGGAAATTTGACCAAGCTCACTATGTTATCTTTATCATCAAATCAACTCACCGGATCTATTCCTCCCCATATTGGAAATTTAACAAACGCCAAGGTAATATGTTTTATTGGAAATGAACTTACTGGCGAGATTCCAATAGAAATGGAGAAGCTTACTGGTCTGGAATGTTTGCAACTAGCTGATAACAATTTTATAGGCCAAATACCTCAGAACATTTGCCTCGGTGGAAACATGAAATACTTCACTGCAGGTAATAACAACTTCACTGGCCCAATTCCAGAGACTTTGAGGAAATGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAATCATCTAACTGGGGATATAACAAACTTTTTTGATGTACTTCCAAACTTGAACTACATCGATCTGAGTGAAAATAATTTTCATGGTAATCTTTCACCTAGTTGGGGAAAATTCCGTAGCCTCACAAGCCTCATGATCTTCAACAATAATTTGTCAGGTGTTATTCCACCAGAACTAGGTGGGGCAACCAAATTACAGGTGCTTGATCTATCCTCAAACCATCTTACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCAATCAGCAACAATAATCTTTCAGGAAATGTTCCCATGAAAATAGAATCACTGCAGGAACTTAAAATATTGGACCTTGGATCAAATGATTTCAGAGGCTTAATCCAAAAACAACTTGGAAATTTGCACAATTTATTGCGCATGAGTCTGAGACAGAATAAATTTGAGGGAAACATTCCTTCAGAGCTTGGCAATTTGAAATATCTCACAAGTCTGGATCTCAGTGAAAATTTGTTGAGTGGAACATTACCACCGACGCTTGGTGGAATAAAGGGCTTAGAAGCATTGAATCTATCGCACAATAGCCTTTCAGGTGATCTCTCAAGCTTAGATGATATGATAAGCTTGACATCTTTTGATATATCATACAACCAGTTTGAGGGTCCACTTCCTAACAATCCAGTCTTCGAGAATGCTACAATTGCATCCTTGAGAAATAATAAAGGCCTGTGCGGCAATGTCACAGGCTTGGTCCCTTGCCCAACAGGAAGAGTGAAATCTCATAATAATACGACAAGGACAGTGCTAATAGCAGTTTTACCCCTTACTGTGGCCATTCTAATGCTTGGACTATTTCTTTTTGGGGTCTCCTATCATTATTGCCGAACTCCAAACAAAGAAAAAGACCAGACTACAAGTTTACGATGTCCCAGCATGTTTCCAATATGGAGTTCTGGAGGCAAAATTATGTTTGAGAATATTATTGAAGCCACCGAATATTTTGATGACAAATATCTCATTGGAGTTGGAGGTCAAGGTTGTGTTTACAAAGCAGTATTACCCACAGGTGAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTTCAAATGGAGAAATCCTGAATCAGAAAGCTTTCGCAAGTGAGATCCAGGCTTTGACAGAAATTCGACATCGTAACATTCTAAAGTTTCATGGGTTTTGTTCGCATTCACAGTACTCATTTCTGGTGTTCGAATTCTTGGAGAGGGGCGATGTGAAGAAGATTTTGAAGGATGATGAACAAGCAACTGCTTTTGATTGGAATAAAAGGGTGGGTGTTGTTAAAGACGTGGCAAAAGCATTATGCTATATGCACCATGATTGCTTACCTCCAATTGTTCATCGTGATATATCAAGCAAAAATGTTCTTTTGGATTCAGAATATGTTGCTCATGTCTCAGACTTCGGAACAGCTAAGCTTCTTGATCATAATTCATCGAATTGGACATCATTTGCAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAACGAGAAATGTGACGTGTATAGTTTTGGGGTGTTTGCATTGGAAATATTATTTGGAAGGCACCCTGGTGATGTTACATCTTTATTGCAATCTTCTTTATCAATTGGTATGAGCTCAACACTTGATCATATGGCATTGATGGATAAGTTGGATGAACGTCTCCCTGATCCAACAAGTTCTACTATGAAAGAGGTGCTATTAATTGTGAAGGTAGCAATTGCTTGCTTGACTGAAAGTCCACGATCTCGCCCAACCATGAAGCTTGTTACCGACGAGCTTGCAATGTCAAGATCATCTTCAATGTCACACACAGACCTCAAAGACTGA 2775 0.3928 MVFLFPMLLSMKLQPLWLLLWKASLDNHSQASLSSWNGNNPCNWLGIACDDSNSVSDINLIRLGLKGTLQTFNFSLLPNILNLNISYNSLSGSIPPQIQHLSNLSTLDLSTNKLSGAIPNTICNLSKLKYLNLSVNALSGPIPNEVGNLHSLLTFDIFANNLSGPIPPSLGTLPLLESIHLFENKLNGSIPSTLGNLTKLTMLSLSSNQLTGSIPPHIGNLTNAKVICFIGNELTGEIPIEMEKLTGLECLQLADNNFIGQIPQNICLGGNMKYFTAGNNNFTGPIPETLRKCYSLKRLRLQQNHLTGDITNFFDVLPNLNYIDLSENNFHGNLSPSWGKFRSLTSLMIFNNNLSGVIPPELGGATKLQVLDLSSNHLTGNIPEDLCNLTLLFDLSISNNNLSGNVPMKIESLQELKILDLGSNDFRGLIQKQLGNLHNLLRMSLRQNKFEGNIPSELGNLKYLTSLDLSENLLSGTLPPTLGGIKGLEALNLSHNSLSGDLSSLDDMISLTSFDISYNQFEGPLPNNPVFENATIASLRNNKGLCGNVTGLVPCPTGRVKSHNNTTRTVLIAVLPLTVAILMLGLFLFGVSYHYCRTPNKEKDQTTSLRCPSMFPIWSSGGKIMFENIIEATEYFDDKYLIGVGGQGCVYKAVLPTGEVVAVKKLHSVSNGEILNQKAFASEIQALTEIRHRNILKFHGFCSHSQYSFLVFEFLERGDVKKILKDDEQATAFDWNKRVGVVKDVAKALCYMHHDCLPPIVHRDISSKNVLLDSEYVAHVSDFGTAKLLDHNSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVFALEILFGRHPGDVTSLLQSSLSIGMSSTLDHMALMDKLDERLPDPTSSTMKEVLLIVKVAIACLTESPRSRPTMKLVTDELAMSRSSSMSHTDLKD* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00118 924 FunFam Uncharacterized protein 267 564 - -
Phacun42g00118 924 Gene3D Ribonuclease Inhibitor 268 563 IPR032675 -
Phacun42g00118 924 Pfam Leucine rich repeat N-terminal domain 17 50 IPR013210 -
Phacun42g00118 924 ProSiteProfiles Leucine-rich repeat profile. 367 390 IPR001611 GO:0005515
Phacun42g00118 924 Gene3D Phosphorylase Kinase; domain 1 599 714 - -
Phacun42g00118 924 SUPERFAMILY Protein kinase-like (PK-like) 612 909 IPR011009 -
Phacun42g00118 924 Pfam Protein kinase domain 638 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phacun42g00118 924 PANTHER LEUCINE RICH REPEAT KINASE 2 176 915 - -
Phacun42g00118 924 SMART LRR_typ_2 125 149 IPR003591 -
Phacun42g00118 924 SMART LRR_typ_2 366 389 IPR003591 -
Phacun42g00118 924 SMART LRR_typ_2 101 124 IPR003591 -
Phacun42g00118 924 SMART LRR_typ_2 197 221 IPR003591 -
Phacun42g00118 924 SMART LRR_typ_2 341 365 IPR003591 -
Phacun42g00118 924 SMART LRR_typ_2 461 485 IPR003591 -
Phacun42g00118 924 SMART LRR_typ_2 413 436 IPR003591 -
Phacun42g00118 924 SMART LRR_typ_2 245 269 IPR003591 -
Phacun42g00118 924 Gene3D Transferase(Phosphotransferase) domain 1 715 923 - -
Phacun42g00118 924 PRINTS Leucine-rich repeat signature 104 117 - -
Phacun42g00118 924 PRINTS Leucine-rich repeat signature 485 498 - -
Phacun42g00118 924 ProSiteProfiles Protein kinase domain profile. 636 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phacun42g00118 924 ProSiteProfiles Leucine-rich repeat profile. 487 509 IPR001611 GO:0005515
Phacun42g00118 924 SMART LRR_sd22_2 365 391 - -
Phacun42g00118 924 SMART LRR_sd22_2 461 490 - -
Phacun42g00118 924 SMART LRR_sd22_2 101 127 - -
Phacun42g00118 924 SMART LRR_sd22_2 197 223 - -
Phacun42g00118 924 SMART LRR_sd22_2 413 439 - -
Phacun42g00118 924 FunFam MDIS1-interacting receptor like kinase 2 715 915 - -
Phacun42g00118 924 SUPERFAMILY L domain-like 296 547 - -
Phacun42g00118 924 ProSitePatterns Tyrosine protein kinases specific active-site signature. 760 772 IPR008266 GO:0004672|GO:0006468
Phacun42g00118 924 FunFam Leucine-rich repeat receptor protein kinase MSP1 599 714 - -
Phacun42g00118 924 FunFam MDIS1-interacting receptor like kinase 2 isoform A 167 266 - -
Phacun42g00118 924 FunFam Nuclear pore complex protein NUP107 14 166 - -
Phacun42g00118 924 SUPERFAMILY L domain-like 40 309 - -
Phacun42g00118 924 Gene3D Ribonuclease Inhibitor 15 164 IPR032675 -
Phacun42g00118 924 Pfam Leucine rich repeat 342 402 IPR001611 GO:0005515
Phacun42g00118 924 Gene3D Ribonuclease Inhibitor 165 267 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00118 18 808 Receptor kinase-like Gene Family AT4G08850 41.176 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phacun42g00118 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00118 - - gmx:100809509 1409.43