Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00117 ATGGTGTTCCTCTTTCCGATGCTTCTGTCCATGAAGCTCCAACCTTTATGGCTTCTTCTTGTAATGTTCTTTTGTGCATTTCCCCATTATCATGCTGCCAATTCTTCTGATATTGATTCTGAAGCAAATGCTTTGTTGAAGTGGAAAGCCAGCCTTGACAACCACAGTCAAGCTTCTCTCTCTTCATGGAATGGCAATAATCCTTGCAACTGGCTGGGAATTGCATGTGATGATTCCAATTCTGTTTCTGACATAAATCTTATACGTCTTGGATTAAAAGGTACACTTCAAACTTTTAACTTCTCATTACTTCCAAACATTCTCAATCTCAATATCAGTTACAACTCCTTGTCTGGAAGTATTCCTCCACAAATTCAACACTTGTCCAATCTCAGTACACTTGATTTGTCTACCAATAAACTCTCTGGTGCCATTCCCAATACCATCTGTAATCTCTCCAAACTCAAATATCTCAATCTTAGTGTCAATGCTCTTTCTGGTCCTATTCCTAATGAAGTTGGCAATCTCCACTCTCTTCTCACATTCGATATATTTGCCAACAACCTCTCTGGACCAATCCCTCCTTCCTTAGGTACCTTGCCCCTTTTGGAATCCATTCACCTTTTTGAAAATAAACTCAATGGTTCCATTCCTTCCACTCTTGGAAATTTGACCAAGCTCACTATGTTATCTTTATCATCAAATCAACTCACCGGATCTATTCCTCCCCATATTGGAAATTTAACAAACGCCAAGGTAATATGTTTTATTGGAAATGAACTTACTGGCGAGATTCCAATAGAAATGGAGAAGCTTACTGGTCTGGAATGTTTGCAACTAGCTGATAACAATTTTATAGGCCAAATACCTCAGAACATTTGCCTCGGTGGAAACATGAAATACTTCACTGCAGGTAATAACAACTTCACTGGCCCAATTCCAGAGACTTTGAGGAAATGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAATCATCTAACTGGGGATATAACAAACTTTTTTGATGTACTTCCAAACTTGAACTACATCGATCTGAGTGAAAATAATTTTCATGGTAATCTTTCACCTAGTTGGGGAAAATTCCGTAGCCTCACAAGCCTCATGATCTTCAACAATAATTTGTCAGGTGTTATTCCACCAGAACTAGGTGGGGCAACCAAATTACAGGTGCTTGATCTATCCTCAAACCATCTTACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCAATCAGCAACAATAATCTTTCAGGAAATGTTCCCATGAAAATAGAATCACTGCAGGAACTTAAAATATTGGACCTTGGATCAAATGATTTCAGAGGCTTAATCCAAAAACAACTTGGAAATTTGCACAATTTATTGCGCATGAGTCTGAGACAGAATAAATTTGAGGGAAACATTCCTTCAGAGCTTGGCAATTTGAAATATCTCACAAGTCTGGATCTCAGTGAAAATTTGTTGAGTGGAACATTACCACCGACGCTTGGTGGAATAAAGGGCTTAGAAGCATTGAATCTATCGCACAATAGCCTTTCAGGTGATCTCTCAAGCTTAGATGATATGATAAGCTTGACATCTTTTGATATATCATACAACCAGTTTGAGGGTCCACTTCCTAACAATCCAGTCTTCGAGAATGCTACAATTGCATCCTTGAGAAATAATAAAGGCCTGTGCGGCAATGTCACAGGCTTGGTCCCTTGCCCAACAGGAAGAGTGAAATCTCATAATAATACGACAAGGACAGTGCTAATAGCAGTTTTACCCCTTACTGTGGCCATTCTAATGCTTGGACTATTTCTTTTTGGGGTCTCCTATCATTATTGCCGAACTCCAAACAAAGAAAAAGACCAGACTACAAGTTTACGATGTCCCAGCATGTTTCCAATATGGAGTTCTGGAGGCAAAATTATGTTTGAGAATATTATTGAAGCCACCGAATATTTTGATGACAAATATCTCATTGGAGTTGGAGGTCAAGGTTGTGTTTACAAAGCAGTATTACCCACAGGTGAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTTCAAATGGAGAAATCCTGAATCAGAAAGCTTTCGCAAGTGAGATCCAGGCTTTGACAGAAATTCGACATCGTAACATTCTAAAGTTTCATGGGTTTTGTTCGCATTCACAGTACTCATTTCTGGTGTTCGAATTCTTGGAGAGGGGCGATGTGAAGAAGATTTTGAAGGATGATGAACAAGCAACTGCTTTTGATTGGAATAAAAGGGTGGGTGTTGTTAAAGACGTGGCAAAAGCATTATGCTATATGCACCATGATTGCTTACCTCCAATTGTTCATCGTGATATATCAAGCAAAAATGTTCTTTTGGATTCAGAATATGTTGCTCATGTCTCAGACTTCGGAACAGCTAAGCTTCTTGATCATAATTCATCGAATTGGACATCATTTGCAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAACGAGAAATGTGACGTGTATAGTTTTGGGGTGTTTGCATTGGAAATATTATTTGGAAGGCACCCTGGTGATGTTACATCTTTATTGCAATCTTCTTTATCAATTGGTATGAGCTCAACACTTGATCATATGGCATTGATGGATAAGTTGGATGAACGTCTCCCTGATCCAACAAGTTCTACTATGAAAGAGGTGCTATTAATTGTGAAGGTAGCAATTGCTTGCTTGACTGAAAGTCCACGATCTCGCCCAACCATGAAGCTTGTTACCGACGAGCTTGCAATGTCAAGATCATCTTCAATGTCACACACAGACCTCAAAGACTGA 2856 0.3918 MVFLFPMLLSMKLQPLWLLLVMFFCAFPHYHAANSSDIDSEANALLKWKASLDNHSQASLSSWNGNNPCNWLGIACDDSNSVSDINLIRLGLKGTLQTFNFSLLPNILNLNISYNSLSGSIPPQIQHLSNLSTLDLSTNKLSGAIPNTICNLSKLKYLNLSVNALSGPIPNEVGNLHSLLTFDIFANNLSGPIPPSLGTLPLLESIHLFENKLNGSIPSTLGNLTKLTMLSLSSNQLTGSIPPHIGNLTNAKVICFIGNELTGEIPIEMEKLTGLECLQLADNNFIGQIPQNICLGGNMKYFTAGNNNFTGPIPETLRKCYSLKRLRLQQNHLTGDITNFFDVLPNLNYIDLSENNFHGNLSPSWGKFRSLTSLMIFNNNLSGVIPPELGGATKLQVLDLSSNHLTGNIPEDLCNLTLLFDLSISNNNLSGNVPMKIESLQELKILDLGSNDFRGLIQKQLGNLHNLLRMSLRQNKFEGNIPSELGNLKYLTSLDLSENLLSGTLPPTLGGIKGLEALNLSHNSLSGDLSSLDDMISLTSFDISYNQFEGPLPNNPVFENATIASLRNNKGLCGNVTGLVPCPTGRVKSHNNTTRTVLIAVLPLTVAILMLGLFLFGVSYHYCRTPNKEKDQTTSLRCPSMFPIWSSGGKIMFENIIEATEYFDDKYLIGVGGQGCVYKAVLPTGEVVAVKKLHSVSNGEILNQKAFASEIQALTEIRHRNILKFHGFCSHSQYSFLVFEFLERGDVKKILKDDEQATAFDWNKRVGVVKDVAKALCYMHHDCLPPIVHRDISSKNVLLDSEYVAHVSDFGTAKLLDHNSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVFALEILFGRHPGDVTSLLQSSLSIGMSSTLDHMALMDKLDERLPDPTSSTMKEVLLIVKVAIACLTESPRSRPTMKLVTDELAMSRSSSMSHTDLKD* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00117 951 FunFam Nuclear pore complex protein NUP107 38 193 - -
Phacun42g00117 951 FunFam Uncharacterized protein 294 591 - -
Phacun42g00117 951 Gene3D Ribonuclease Inhibitor 191 295 IPR032675 -
Phacun42g00117 951 ProSitePatterns Tyrosine protein kinases specific active-site signature. 787 799 IPR008266 GO:0004672|GO:0006468
Phacun42g00117 951 Gene3D Transferase(Phosphotransferase) domain 1 742 950 - -
Phacun42g00117 951 FunFam MDIS1-interacting receptor like kinase 2 isoform A 194 293 - -
Phacun42g00117 951 Pfam Protein kinase domain 665 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phacun42g00117 951 PANTHER LEUCINE RICH REPEAT KINASE 2 202 942 - -
Phacun42g00117 951 Gene3D Ribonuclease Inhibitor 296 590 IPR032675 -
Phacun42g00117 951 FunFam Leucine-rich repeat receptor protein kinase MSP1 626 741 - -
Phacun42g00117 951 Gene3D Ribonuclease Inhibitor 39 190 IPR032675 -
Phacun42g00117 951 Pfam Leucine rich repeat 369 429 IPR001611 GO:0005515
Phacun42g00117 951 SUPERFAMILY Protein kinase-like (PK-like) 639 936 IPR011009 -
Phacun42g00117 951 Gene3D Phosphorylase Kinase; domain 1 626 741 - -
Phacun42g00117 951 SMART LRR_sd22_2 128 154 - -
Phacun42g00117 951 SMART LRR_sd22_2 440 466 - -
Phacun42g00117 951 SMART LRR_sd22_2 224 250 - -
Phacun42g00117 951 SMART LRR_sd22_2 392 418 - -
Phacun42g00117 951 SMART LRR_sd22_2 488 517 - -
Phacun42g00117 951 PRINTS Leucine-rich repeat signature 512 525 - -
Phacun42g00117 951 PRINTS Leucine-rich repeat signature 131 144 - -
Phacun42g00117 951 SUPERFAMILY L domain-like 289 565 - -
Phacun42g00117 951 ProSiteProfiles Protein kinase domain profile. 663 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phacun42g00117 951 ProSiteProfiles Leucine-rich repeat profile. 514 536 IPR001611 GO:0005515
Phacun42g00117 951 SUPERFAMILY L domain-like 41 337 - -
Phacun42g00117 951 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Phacun42g00117 951 FunFam MDIS1-interacting receptor like kinase 2 742 942 - -
Phacun42g00117 951 ProSiteProfiles Leucine-rich repeat profile. 394 417 IPR001611 GO:0005515
Phacun42g00117 951 SMART LRR_typ_2 368 392 IPR003591 -
Phacun42g00117 951 SMART LRR_typ_2 272 296 IPR003591 -
Phacun42g00117 951 SMART LRR_typ_2 488 512 IPR003591 -
Phacun42g00117 951 SMART LRR_typ_2 440 463 IPR003591 -
Phacun42g00117 951 SMART LRR_typ_2 393 416 IPR003591 -
Phacun42g00117 951 SMART LRR_typ_2 128 151 IPR003591 -
Phacun42g00117 951 SMART LRR_typ_2 152 176 IPR003591 -
Phacun42g00117 951 SMART LRR_typ_2 224 248 IPR003591 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00117 13 835 Receptor kinase-like Gene Family AT4G08850 41.050 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phacun42g00117 Pkinase 3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00117 - - gmx:100809509 1449.11