Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00107 ATGGAGAACAGAAGAATGGCAGTCAACGGAGAACAGAAACGCAGCCCCAGAAACCAAAAGATCCCATTAGCAGATTCCAATCTCCAAAACATGGCGACCCTTTTAACCCCAAGGTTCAAATCTGCAGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTATTGGCCAGCCTCATCGTTGAGGACACACCAGATAGAGATTCCAAGCACAAGAGACGCTCGCTTATGAATTCCAAATCTCCATCCACCAACTCTTCAAGGAAACGTAGAGCTCGGAGGACTTCACAAAAACCAATCCCTGTAATTCTTGATCTTGATGCAGAAGAAACTCCCGTAAAAGATAGTGGAAGAAAGAAGAAAGAAGAAAGGGTTTGTGTTAATAATGAGGGAAGCAAAGTAGGAGGAGGGGATGGGAATGAGTCGAAAGAGAAGATTCCGGGCGCTCCTTCTTCTAGTTCTGCTCTACCCTTCATTGATAAACTTAGGGACGAGCTTTCCTGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCTGCAGACAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTAATAAGCAATGGACGATCATGTAGTGTGAACACAGTCCTCTGGAACACAATCCAGCTTCTGTTCCCCCAAGAAATTGAGGCAAGAAAAGCAGCTGGCTCCTTGAATGGTCGCCAACAAGCTCAAAATCTGAGTCCAGAAACATCATTTTATGCTAACCTAAGGAGTACAAGCATACAACCTTCTGGTGGGTCATCAAGAAGAAACATGAATTCAAGCAGGAGTGTGGCAATAACATCAACACAGGAGGATGAGGATGCTGCATTGGCTAGAAGGTTACAGAGAGAAATAGATGAACAAAGCCCGGGAACAAGTCGAAGTCGACCAAGAATGAGGACAAGAAGAGGGGTTTCTACTAGCCAACATGAGGATGCAGCTTTGGCTCTGAGGCTGCAGAGAGAAGAGTTCATCCAAACTTTTAGAGGGGGCAGCCAGGAACAGACTATTAGGCTACCTTCATCAACATTTGCTAGAGCAAATTTGAGGGCTATGGCATCTAGAGCCATCAATCTTAGGACTAATGACAGAAGAAGATAA 1158 0.4508 MENRRMAVNGEQKRSPRNQKIPLADSNLQNMATLLTPRFKSAAAMAGWDEEALLLASLIVEDTPDRDSKHKRRSLMNSKSPSTNSSRKRRARRTSQKPIPVILDLDAEETPVKDSGRKKKEERVCVNNEGSKVGGGDGNESKEKIPGAPSSSSALPFIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCSVNTVLWNTIQLLFPQEIEARKAAGSLNGRQQAQNLSPETSFYANLRSTSIQPSGGSSRRNMNSSRSVAITSTQEDEDAALARRLQREIDEQSPGTSRSRPRMRTRRGVSTSQHEDAALALRLQREEFIQTFRGGSQEQTIRLPSSTFARANLRAMASRAINLRTNDRRR* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00107 385 MobiDBLite consensus disorder prediction 64 151 - -
Phacun42g00107 385 MobiDBLite consensus disorder prediction 263 329 - -
Phacun42g00107 385 MobiDBLite consensus disorder prediction 292 312 - -
Phacun42g00107 385 MobiDBLite consensus disorder prediction 107 127 - -
Phacun42g00107 385 SMART ring_2 167 205 IPR001841 -
Phacun42g00107 385 PANTHER UNCHARACTERIZED 320 377 - -
Phacun42g00107 385 ProSitePatterns Zinc finger RING-type signature. 182 191 IPR017907 -
Phacun42g00107 385 SUPERFAMILY RING/U-box 158 230 - -
Phacun42g00107 385 ProSiteProfiles Zinc finger RING-type profile. 167 206 IPR001841 -
Phacun42g00107 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 236 IPR013083 -
Phacun42g00107 385 Pfam Zinc finger, C3HC4 type (RING finger) 167 205 IPR018957 GO:0046872
Phacun42g00107 385 MobiDBLite consensus disorder prediction 263 289 - -
Phacun42g00107 385 MobiDBLite consensus disorder prediction 1 25 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00107 148 221 RAD5 or RAD16-like Gene Family AT5G43530 37.500 5.49e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00107 - - gmx:102666585 544.273