Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00077 ATGGGAAGAAGCTCTCCAATGTCAGTCATTACCTGCTTCTTTGTCCTGCAATGGTTAACATGGTCAAGGGTGCTTGTGGCTCATGGAAGAAGTCATTGCTCAAGGTCCATTATGAGCATAGGTGCTGTGCTTGATTTGAGTTCACAAATTGGAAAACATCAGAAGATAGCCATGGAAATTGCAGTCCAAGACTTCAATCGGTTGAGTTGTTCTAAGCTGGTTTTGAAGATAAAAAATTCCAATGGGAATTCAGCTCAAGCAGTTGCTAGTGCTATGCATCTGGCCCAAAGCAAGCAAGTGCTAGCCATCATAGGTACAATAACACACAATGAAGCAACTCTCGCAAGTGAACTTAATGACAAAATAAAAAATATTCCTGTCTTGTCTCTAATTTCACCTGTAGCAAGATCAGAGCAAGTATCACCTCTATTGCCGTACTTTATCCAAGTGGGATATAGTATCAACCTTCACATGCAATGCATTGCAGCCATTGTAGGAGAATATAGATGGAGAAAGGTGACAGCAATCTATGAATTTGATGACAGATTTTCTTCTGATCCAGGGATGCTACTCAACCTCTCCTATTCTCTAAGACTTGTTGGTTCTGAGATTGACAATCATGTAGCTTTTCCTTCCTTGTCCTCTCTATTAGACCCAAATTCTACCATTGAAAATGAGTTTAATAGGCTAAAAAGCAAGAGTAACAGGGTCTTCTTGATTCTACAATCTTCTATAGAGCTAGCTAACCTACTTTTTGAGAAAGCAAACCAAATGGGTTTAATGGGAAAGGGTTCTGTGTGGATCATCCCAGATGGGATTGCTGGTAATCTTGATTCAGTAAACCCGTCTGCTATCCTTAACATGCAAGGAGTTATTGGATTTAAGACACACTTCTTGGAAACAAGCAAGGAATTTAGAAGGTTTAAATTCAAATTTCGTAGAAGGTTTGTGTTGGAGTTCCCGGAAGAAGAGAACATTAACCCAAGTTCCTTTGCACTTCAATCGTATAAAGCAACCTGGGAAGTTGCTCAAGCTGCAAGAGAATCACAAGGGAAGTTAACCCTTAAACAATTATTAAAAAGTAATATCTCCAGGACTGAGAAATTACGGAAATCACCGACCCTCAAAATAATTAACGTGATAGGTAAAAGTTACAGAGAGTTGGCATCATGGTCTCCAGCATTAGGTTTCTCCAAAAGCCTTGTTACAGAACAGCCGACAGAGATGAACGCAAACAGTGGTTCAAGTGGAGTTTTGAGTAAAGTTTATTGGCCTGGAGGTATACAATTTGTTCCTAAGGGATGGACTCACAGCACCAAAGGGAGGAAACTGAAAATAGGAGTGCCTGCAGAAGGTGCATTTGCTGATTTCGTGAATGTGAAATATGATATCATCAGGAATATAACTTCTATTACTGGATTCTCAATTGATGTCTTTAAAGCAGCTGTTCATAATTTGGCTTATGATTTGAATTTCGATTTTGTTCCCTTCAATGGATCTTATGATGAAATGGTAGATCAAGTCTACAATAAGACATTGGATGCTGCTGTCGGAGATACATCAATAATGGCATATAGATATCATTTAGTTGACTTCTCACAACCGTATGTTGAATCTGGTATTGACATGGTGGTCACAGAGCAGCCAGCTAAATTGAAGGAAACATGGATTTTTTTAGAAGCCTTCACAAAAGACATGTGGATAATGATGGCAGCACTGCACATTTTTGTGGGATTCGTCATATGGTTGATCGAAAGGCAAGTTAATGCAGAACTAAAAGGATTGGGGTCCATGCTTTGGTTCTTAGTCACTGTAATATTCTATGCACACAGAGAACAAATTAGAAGCCCCTTGGCTCGAACTGTGCTGGCACCATGGTTATTTGTGATCCTCATTGCAACTAGTACTTTCACAGCAAGTTTGACTTCCATGATGACTGTTTCACAACTAGAGCCATCTGTGTTGGATATCCAGACCCTTCTGAAAAGAAATTTGGCAGTTGGTTGTAATGGAAATTCGTTCATTGTGAAGTATTTGACTGAGGTACACAAATTCAAGCGTGAGAACATTAAGAAAATTAACAATATAAATGATTATCCTGCTGCCTTTCGGAACAAAGATATCGAAGCTGCTTTCTTTATTGCACCTCACGCTAAGGTATTTCCAAAGGGTTCAACTCTGGCCACTGACATATCTGAAGCATTGCTGAAAGTGATAGAGAGTGGAGAGACTGAACAACTAGAAAAAGATATGCTAACGGTAGGAGGCAATACCACTTGTTCTCCTTTAGAGAGCAAGGCAAAGGATAGGTCATCGACTGGATTTCAACCTTTCCTTGGCCTATTTTGCATCTGTTCTATTGTTGCTATTCTGGCATTGTTATATAGTATGATTTGTTTGTTGATGAACAATGTAGAGACCTTCACTAGCTACATACATGTAAGATTGACACAATTAAGGAGAATATGGAGATGCACAACCACAATTTTTTCTGGGAGCCGCTCAAGACTCCAATCAGGAAGTCTGGGAAGTGTAAACCTGACACAGTAA 2550 0.3949 MGRSSPMSVITCFFVLQWLTWSRVLVAHGRSHCSRSIMSIGAVLDLSSQIGKHQKIAMEIAVQDFNRLSCSKLVLKIKNSNGNSAQAVASAMHLAQSKQVLAIIGTITHNEATLASELNDKIKNIPVLSLISPVARSEQVSPLLPYFIQVGYSINLHMQCIAAIVGEYRWRKVTAIYEFDDRFSSDPGMLLNLSYSLRLVGSEIDNHVAFPSLSSLLDPNSTIENEFNRLKSKSNRVFLILQSSIELANLLFEKANQMGLMGKGSVWIIPDGIAGNLDSVNPSAILNMQGVIGFKTHFLETSKEFRRFKFKFRRRFVLEFPEEENINPSSFALQSYKATWEVAQAARESQGKLTLKQLLKSNISRTEKLRKSPTLKIINVIGKSYRELASWSPALGFSKSLVTEQPTEMNANSGSSGVLSKVYWPGGIQFVPKGWTHSTKGRKLKIGVPAEGAFADFVNVKYDIIRNITSITGFSIDVFKAAVHNLAYDLNFDFVPFNGSYDEMVDQVYNKTLDAAVGDTSIMAYRYHLVDFSQPYVESGIDMVVTEQPAKLKETWIFLEAFTKDMWIMMAALHIFVGFVIWLIERQVNAELKGLGSMLWFLVTVIFYAHREQIRSPLARTVLAPWLFVILIATSTFTASLTSMMTVSQLEPSVLDIQTLLKRNLAVGCNGNSFIVKYLTEVHKFKRENIKKINNINDYPAAFRNKDIEAAFFIAPHAKVFPKGSTLATDISEALLKVIESGETEQLEKDMLTVGGNTTCSPLESKAKDRSSTGFQPFLGLFCICSIVAILALLYSMICLLMNNVETFTSYIHVRLTQLRRIWRCTTTIFSGSRSRLQSGSLGSVNLTQ* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00077 849 Gene3D - 454 556 - -
Phacun42g00077 849 Pfam Ligand-gated ion channel 719 787 IPR001320 GO:0015276|GO:0016020
Phacun42g00077 849 SUPERFAMILY Periplasmic binding protein-like II 421 749 - -
Phacun42g00077 849 Gene3D - 557 697 - -
Phacun42g00077 849 FunFam Glutamate receptor 157 326 - -
Phacun42g00077 849 Pfam Bacterial extracellular solute-binding proteins, family 3 470 718 IPR001638 -
Phacun42g00077 849 Gene3D - 153 329 - -
Phacun42g00077 849 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 803 IPR015683 -
Phacun42g00077 849 Pfam Receptor family ligand binding region 55 359 IPR001828 -
Phacun42g00077 849 SMART GluR_14 443 754 IPR001320 GO:0015276|GO:0016020
Phacun42g00077 849 PIRSF IGluLR_plant 719 836 IPR017103 -
Phacun42g00077 849 PIRSF IGluLR_plant 349 721 IPR017103 -
Phacun42g00077 849 PIRSF IGluLR_plant 6 370 IPR017103 -
Phacun42g00077 849 FunFam Glutamate receptor 555 688 - -
Phacun42g00077 849 FunFam Glutamate receptor 439 554 - -
Phacun42g00077 849 Gene3D - 330 447 - -
Phacun42g00077 849 SUPERFAMILY Periplasmic binding protein-like I 34 435 IPR028082 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00077 7 830 Ion Channels AT2G29110 29.700 3.72e-107 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00077 - - gmx:100778941 1355.12