Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00076 ATGCATCTGGCCCAAAGCAAGCAAGTGCTAGCCATCATAGGTACAATAACACACAATGAAGCAACTCTCGCAAGTGAACTTAATGACAAAATAAAAAATATTCCTGTCTTGTCTCTAATTTCACCTGTAGCAAGATCAGAGCAAGTATCACCTCTATTGCCGTACTTTATCCAAGTGGGATATAGTATCAACCTTCACATGCAATGCATTGCAGCCATTGTAGGAGAATATAGATGGAGAAAGGTGACAGCAATCTATGAATTTGATGACAGATTTTCTTCTGATCCAGGGATGCTACTCAACCTCTCCTATTCTCTAAGACTTGTTGGTTCTGAGATTGACAATCATGTAGCTTTTCCTTCCTTGTCCTCTCTATTAGACCCAAATTCTACCATTGAAAATGAGTTTAATAGGCTAAAAAGCAAGAGTAACAGGGTCTTCTTGATTCTACAATCTTCTATAGAGCTAGCTAACCTACTTTTTGAGAAAGCAAACCAAATGGGTTTAATGGGAAAGGGTTCTGTGTGGATCATCCCAGATGGGATTGCTGGTAATCTTGATTCAGTAAACCCGTCTGCTATCCTTAACATGCAAGGAGTTATTGGATTTAAGACACACTTCTTGGAAACAAGCAAGGAATTTAGAAGGTTTAAATTCAAATTTCGTAGAAGGTTTGTGTTGGAGTTCCCGGAAGAAGAGAACATTAACCCAAGTTCCTTTGCACTTCAATCGTATAAAGCAACCTGGGAAGTTGCTCAAGCTGCAAGAGAATCACAAGGGAAGTTAACCCTTAAACAATTATTAAAAAGTAATATCTCCAGGACTGAGAAATTACGGAAATCACCGACCCTCAAAATAATTAACGTGATAGGTAAAAGTTACAGAGAGTTGGCATCATGGTCTCCAGCATTAGGTTTCTCCAAAAGCCTTGTTACAGAACAGCCGACAGAGATGAACGCAAACAGTGGTTCAAGTGGAGTTTTGAGTAAAGTTTATTGGCCTGGAGGTATACAATTTGTTCCTAAGGGATGGACTCACAGCACCAAAGGGAGGAAACTGAAAATAGGAGTGCCTGCAGAAGGTGCATTTGCTGATTTCGTGAATGTGAAATATGATATCATCAGGAATATAACTTCTATTACTGGATTCTCAATTGATGTCTTTAAAGCAGCTGTTCATAATTTGGCTTATGATTTGAATTTCGATTTTGTTCCCTTCAATGGATCTTATGATGAAATGGTAGATCAAGTCTACAATAAGACATTGGATGCTGCTGTCGGAGATACATCAATAATGGCATATAGATATCATTTAGTTGACTTCTCACAACCGTATGTTGAATCTGGTATTGACATGGTGGTCACAGAGCAGCCAGCTAAATTGAAGGAAACATGGATTTTTTTAGAAGCCTTCACAAAAGACATGTGGATAATGATGGCAGCACTGCACATTTTTGTGGGATTCGTCATATGGTTGATCGAAAGGCAAGTTAATGCAGAACTAAAAGGATTGGGGTCCATGCTTTGGTTCTTAGTCACTGTAATATTCTATGCACACAGAGAACAAATTAGAAGCCCCTTGGCTCGAACTGTGCTGGCACCATGGTTATTTGTGATCCTCATTGCAACTAGTACTTTCACAGCAAGTTTGACTTCCATGATGACTGTTTCACAACTAGAGCCATCTGTGTTGGATATCCAGACCCTTCTGAAAAGAAATTTGGCAGTTGGTTGTAATGGAAATTCGTTCATTGTGAAGTATTTGACTGAGGTACACAAATTCAAGCGTGAGAACATTAAGAAAATTAACAATATAAATGATTATCCTGCTGCCTTTCGGAACAAAGATATCGAAGCTGCTTTCTTTATTGCACCTCACGCTAAGGTATTTCCAAAGGGTTCAACTCTGGCCACTGACATATCTGAAGCATTGCTGAAAGTGATAGAGAGTGGAGAGACTGAACAACTAGAAAAAGATATGCTAACGGTAGGAGGCAATACCACTTGTTCTCCTTTAGAGAGCAAGGCAAAGGATAGGTCATCGACTGGATTTCAACCTTTCCTTGGCCTATTTTGCATCTGTTCTATTGTTGCTATTCTGGCATTGTTATATAGTATGATTTGTTTGTTGATGAACAATGTAGAGACCTTCACTAGCTACATACATGTAAGATTGACACAATTAAGGAGAATATGGAGATGCACAACCACAATTTTTTCTGGGAGCCGCTCAAGACTCCAATCAGGAAGTCTGGGAAGTGTAAACCTGACACAGTAA 2277 0.3917 MHLAQSKQVLAIIGTITHNEATLASELNDKIKNIPVLSLISPVARSEQVSPLLPYFIQVGYSINLHMQCIAAIVGEYRWRKVTAIYEFDDRFSSDPGMLLNLSYSLRLVGSEIDNHVAFPSLSSLLDPNSTIENEFNRLKSKSNRVFLILQSSIELANLLFEKANQMGLMGKGSVWIIPDGIAGNLDSVNPSAILNMQGVIGFKTHFLETSKEFRRFKFKFRRRFVLEFPEEENINPSSFALQSYKATWEVAQAARESQGKLTLKQLLKSNISRTEKLRKSPTLKIINVIGKSYRELASWSPALGFSKSLVTEQPTEMNANSGSSGVLSKVYWPGGIQFVPKGWTHSTKGRKLKIGVPAEGAFADFVNVKYDIIRNITSITGFSIDVFKAAVHNLAYDLNFDFVPFNGSYDEMVDQVYNKTLDAAVGDTSIMAYRYHLVDFSQPYVESGIDMVVTEQPAKLKETWIFLEAFTKDMWIMMAALHIFVGFVIWLIERQVNAELKGLGSMLWFLVTVIFYAHREQIRSPLARTVLAPWLFVILIATSTFTASLTSMMTVSQLEPSVLDIQTLLKRNLAVGCNGNSFIVKYLTEVHKFKRENIKKINNINDYPAAFRNKDIEAAFFIAPHAKVFPKGSTLATDISEALLKVIESGETEQLEKDMLTVGGNTTCSPLESKAKDRSSTGFQPFLGLFCICSIVAILALLYSMICLLMNNVETFTSYIHVRLTQLRRIWRCTTTIFSGSRSRLQSGSLGSVNLTQ* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00076 758 FunFam Glutamate receptor 348 463 - -
Phacun42g00076 758 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 712 IPR015683 -
Phacun42g00076 758 Pfam Bacterial extracellular solute-binding proteins, family 3 379 625 IPR001638 -
Phacun42g00076 758 Gene3D - 466 606 - -
Phacun42g00076 758 SMART GluR_14 352 663 IPR001320 GO:0015276|GO:0016020
Phacun42g00076 758 SUPERFAMILY Periplasmic binding protein-like I 2 344 IPR028082 -
Phacun42g00076 758 Gene3D - 363 465 - -
Phacun42g00076 758 FunFam Glutamate receptor 66 235 - -
Phacun42g00076 758 SUPERFAMILY Periplasmic binding protein-like II 330 658 - -
Phacun42g00076 758 FunFam Glutamate receptor 464 597 - -
Phacun42g00076 758 Pfam Receptor family ligand binding region 6 268 IPR001828 -
Phacun42g00076 758 Gene3D - 64 356 - -
Phacun42g00076 758 Pfam Ligand-gated ion channel 626 696 IPR001320 GO:0015276|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00076 1 703 Ion Channels AT5G11210 30.368 3.22e-103 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00076 - - gmx:100778941 1224.15