Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00054 ATGTTATTACCAAAAAAGGAAGTACCGGGATGTGCTTTAGTGAAGATCATGGCCTCTTCTAGTTACTCTAACTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGCATGCCAGATTGCATCTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCGAGCAACGTGAGTAAACTCCTGAATGAAGTCCAACCCCATCAAAGGGAGGATGCAGTGAATTCTCTGGCCTATGAAGCTGAAGCACGGATAAAAGATCCAGTTTATGGTTGTGTTGGAGCAATTTCAGTACTCCAAAGACAAGTAATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACCTGCAATGAAATTCCCACTCAAGATGGGAGAAGAATGGGTGAAGGGGGAGGTTCCTCTCTAGGTCAATCTCCTGGTTATTACTACCCTTCTCCTTGGAACAATGATCCACTTGGGGATGGTTATCACAGAGGTGACAATAATATGTGA 537 0.4376 MLLPKKEVPGCALVKIMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEIPTQDGRRMGEGGGSSLGQSPGYYYPSPWNNDPLGDGYHRGDNNM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00054 178 Coils Coil 105 125 - -
Phacun42g00054 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 132 - -
Phacun42g00054 178 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
Phacun42g00054 178 Pfam Lateral organ boundaries (LOB) domain 26 122 IPR004883 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00054 14 129 AS2 family AT3G27650 81.897 1.81e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phacun42g00054 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00054 - - gmx:100306630 347.051