Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00052 ATGGCCTCTTCTAGTTACTCTAACTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGCATGCCAGATTGCATCTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCGAGCAACGTGAGTAAACTCCTGAATGAAGTCCAACCCCATCAAAGGGAGGATGCAGTGAATTCTCTGGCCTATGAAGCTGAAGCACGGATAAAAGATCCAGTTTATGGTTGTGTTGGAGCAATTTCAGTACTCCAAAGACAAGTAATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACCTGCAATGAAATTCCCACTCAAGATGGGAGAAGAATGGGTGAAGGGGGAGGTTCCTCTCTAGGTCAATCTCCTGGTTATTACTACCCTTCTCCTTGGAACAATGATCCACTTGGGGATGGTTATCACAGAGGTGACAATAATATGTGA 489 0.4438 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEIPTQDGRRMGEGGGSSLGQSPGYYYPSPWNNDPLGDGYHRGDNNM* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00052 162 Coils Coil 89 109 - -
Phacun42g00052 162 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Phacun42g00052 162 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Phacun42g00052 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 116 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00052 4 113 AS2 family AT3G27650 85.455 1.04e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phacun42g00052 LOB 8.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00052 - - gmx:100306630 322.398