Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00048 ATGTTAATAAACAACGCAAACAAGCACCAAAAACACACTTCCTCCATCTTCAATTCTTCCCCAAAAATGAGTCAGTGTGTTCCCAGCTGGGATCTCGACGACAACCCACCATCCCCAAGACTCTCTCTTCGCTCCAACTCCAATTCCACTGCCCCTGATGTCCCCATGTTAGACTACGAGGTTGCAGAGCTGACATGGGAAAATGGGCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGCCCCCCACAAGCGCCGCCAATAAGTACACATGGGAGAAGCCACGCGCCAGTGGCACCTTGGAGTCCATAGTGAACCAAGCCACGAGCTTGCCGCACCGTGGAAAGCCAACGCTGAACGGCGACGGCGGCGTGTACGGGAACTACCTGGTCCCGTGGTTAGACCCTCACGGGAGCGCTGGGACGGCGAACACGGTGACGATGGACGCATTGGTGCCGTGCTCGAAGCGGGAGCAGAGCAAGCAGGGCATGGAGTCCGTCCCCAGCACGTGCATGGTAGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCACGGGGCGAAGGGACAGGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACCTTAGGAAGGGATAGCAAGCACTTGACCCTTGACACGTGCGACAGGGAGTTTGGTGTCGCTTTCACTTCCTCCTCTATCAACTCCCTCGACAACACCAACTCCGCTAAGCACTGCACCAACACCACCACCGTCGACGACCATGATTCTGTTTCCCACAGTAAACCAGTGGGTGAAAACGGGGACGAGGAGAAGAAACAAAGAGCAAAAGGAAAATCGTCGGTGTCTACTAAAAGGAGTAGAGCTGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATTAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAGGTGCAGATGATGAATAGAATCAACATGTCATCGATGATGTTGCCATTGACCATGCAACAGCAGCTTCAAATGTCTATGATGTCTCCAATGGGCATGGGATTAGGGATGGGAATGGGGATGGGGATGGGAATGGGGTTGGACATGAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTTCACCCTTCTGCCTTCATGCCGATGGCAGCGTCGTGGGATGCCGCGGCGGCCGGAGGTGGTGACCGATTTCAAGGGAATCCGGCCACCGTGATGCCTGACCCTCTGTCCACACTTTTCGGATGCCAATCACAGCCCATGACCATGGATGCCTACAGTAGACTTGTTGCGATGTATCAGCAGCTGCACCAACCTCCAGTTTCTGGTTCCAAGAACTGA 1425 0.5354 MLINNANKHQKHTSSIFNSSPKMSQCVPSWDLDDNPPSPRLSLRSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKPPTSAANKYTWEKPRASGTLESIVNQATSLPHRGKPTLNGDGGVYGNYLVPWLDPHGSAGTANTVTMDALVPCSKREQSKQGMESVPSTCMVGCSTRVGSCCGNHGAKGQEMSGRDQSVSGSATLGRDSKHLTLDTCDREFGVAFTSSSINSLDNTNSAKHCTNTTTVDDHDSVSHSKPVGENGDEEKKQRAKGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGLDMNSMNRANIPAIPPVLHPSAFMPMAASWDAAAAGGGDRFQGNPATVMPDPLSTLFGCQSQPMTMDAYSRLVAMYQQLHQPPVSGSKN* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00048 474 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 61 468 IPR031066 -
Phacun42g00048 474 Coils Coil 294 314 - -
Phacun42g00048 474 MobiDBLite consensus disorder prediction 190 209 - -
Phacun42g00048 474 Gene3D - 283 349 IPR036638 GO:0046983
Phacun42g00048 474 SMART finulus 294 343 IPR011598 GO:0046983
Phacun42g00048 474 MobiDBLite consensus disorder prediction 1 53 - -
Phacun42g00048 474 MobiDBLite consensus disorder prediction 1 26 - -
Phacun42g00048 474 FunFam transcription factor UNE10 isoform X1 283 348 - -
Phacun42g00048 474 MobiDBLite consensus disorder prediction 249 278 - -
Phacun42g00048 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 350 IPR036638 GO:0046983
Phacun42g00048 474 MobiDBLite consensus disorder prediction 39 53 - -
Phacun42g00048 474 Pfam Helix-loop-helix DNA-binding domain 293 338 IPR011598 GO:0046983
Phacun42g00048 474 MobiDBLite consensus disorder prediction 195 209 - -
Phacun42g00048 474 CDD bHLH_AtPIF_like 288 349 IPR047265 -
Phacun42g00048 474 MobiDBLite consensus disorder prediction 248 302 - -
Phacun42g00048 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00048 23 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 51.910 7.43e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phacun42g00048 HLH 7.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00048 - - vra:106780284 738.799