Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun42g00045 ATGGCTCTTACACTTCAACGTGCTTTATTTGATCTACTTACCCTTGTAGCTATACTCTCAGTATTCTTAGTAGCCCCTTCCTCTTGTTTCAACCCCAAAAAGCTCCTTAACGCTTCATATTATTCTCCATCTGGTTCAAATTGGTCACCTGCAGTGGCCACTTGGTATGGACCTGCTAATGGAGATGGAAGTGAAGGTGGAGCTTGTGGATACGGCAACGTTGTTGGGCAACCTCCATTCTCTTCATTAATATCTGCAGGAAGCCCTCTGTTATATGACTCCGGCAAAGGGTGTGGTTCTTGTTATGAGGTGAAATGCACAGGGAATTCTGCATGCTCAGGCAATCCCGTGAAAGTAGTGATCACTGATGAGTGTGCTGGGTGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGCAGATCTTTTGGAGCAATGGCAGATTCAGGTCAGGATGAGAATCTACGCAATGCAGGAAAAATAAACATTCAACATAGAAGAATTGAATGCAACTATCATGGTAGGTCAATAGCTTTTCACGTGGACTCTGGCTCAAACCAAGAATATTTTGCTGCCTTGGTTGAATTTGAGGATGGGGATGGTGACCTTGCCAAGGTTGAACTCAAGGAAGCACATGATGATTCAAATTCATGGGATTCAATGCAACAATCATGGGGTGCAGTTTGGAAACTTGACAAAGGCTCACCACTGAAGGCACCATTCTCTATCAGGCTAACCACACTTGAGTCTGGCAAGACCATTGTGGCCAGTAATGTGATCCCTGCAGAATGGACTCCTGGTCAGACATATAGATCAATTGTGAATTTTTGA 831 0.4392 MALTLQRALFDLLTLVAILSVFLVAPSSCFNPKKLLNASYYSPSGSNWSPAVATWYGPANGDGSEGGACGYGNVVGQPPFSSLISAGSPLLYDSGKGCGSCYEVKCTGNSACSGNPVKVVITDECAGCGSDAQYHFDLSGRSFGAMADSGQDENLRNAGKINIQHRRIECNYHGRSIAFHVDSGSNQEYFAALVEFEDGDGDLAKVELKEAHDDSNSWDSMQQSWGAVWKLDKGSPLKAPFSIRLTTLESGKTIVASNVIPAEWTPGQTYRSIVNF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun42g00045 276 SUPERFAMILY PHL pollen allergen 175 272 IPR036749 -
Phacun42g00045 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 272 IPR007117 -
Phacun42g00045 276 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Phacun42g00045 276 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Phacun42g00045 276 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Phacun42g00045 276 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Phacun42g00045 276 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Phacun42g00045 276 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Phacun42g00045 276 Gene3D - 34 171 IPR036908 -
Phacun42g00045 276 Pfam Expansin C-terminal domain 177 261 IPR007117 -
Phacun42g00045 276 Gene3D - 172 276 IPR036749 -
Phacun42g00045 276 Pfam Lytic transglycolase 85 164 IPR009009 -
Phacun42g00045 276 SUPERFAMILY Barwin-like endoglucanases 38 174 IPR036908 -
Phacun42g00045 276 PANTHER EXPANSIN-B3 23 276 - -
Phacun42g00045 276 CDD DPBB_EXPB_N 48 170 - -
Phacun42g00045 276 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Phacun42g00045 276 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Phacun42g00045 276 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Phacun42g00045 276 PRINTS Major pollen allergen Lol pI signature 227 244 IPR005795 GO:0005576|GO:0019953
Phacun42g00045 276 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Phacun42g00045 276 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Phacun42g00045 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 175 IPR007112 -
Phacun42g00045 276 SMART dpbb_1 84 165 IPR007112 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun42g00045 29 276 Expansin Gene Family AT1G65680 61.694 3.82e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun42g00045 - - gmx:548090 519.235