Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phacun42g00043 | ATGGACAAGCACAAGTGCAAGCTTTGCTTCAAGAGCTTCTCCAATGGGAGAGCCCTGGGGGGTCACATGCGCTCTCACATGATGAACCTTCCTCTCTCGAAGCCCGAAGAAGCGTCACCGCGAACCATCCAACTCAGCTTCGAAGCCGATTCAGCTTCTTCTTCATCTTCATCTTCATCCGATGATGACGAGGACGGTGACAAGGGTCTCTGTTACGGCCTCAGAGAGAACCCCAAACGAAGCATTCGCCTGGTGGATCCCGAATTCTCGTTCGCAGCTGCGGACACTGGCTCCGCGATCCTCCATGACAGAGAGAGCGAGTCCGAGTCATCCAAAAGCAACCCAACTCGTAAAAGATCCAAAAGGCCATGGAATAATAATAATAATAATAACAACAGCAATTATTATTATTATAATGATAATAATAATAATAATGATACTAACAACTATAGCACCCCCAGCATGAAGAAGCAGGTTTTCGGAACCGAACATGAAGCCCTGATGAAGAAGAAGAGTAAGACAGAATCGTGGGTGGACCACGAACCTGCGAGCTCGGTTTCCGAAGCAACGACCGAGGAAGACGTGGCGTTTTGTCTGATGCTGCTTTCGAGGGACAAATGGAAGCGACATAAGGAGCAGCCGCAATTCGTGGAGGTGGAAGATCAATACGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGACGAAGCGTTTGAGGAGAGCGAGGAATCTCAAGAGACAATGAAACTGTGCAAAAGCCGAGTACGAGGAAGGTACAAATGCGACACGTGCAACAAGGTGTTTCGATCGTACCAAGCGTTGGGGGGCCACCGAGCGAGTCACAAGAAGATCAAAGTGAACGTGAAAATGGACGGTGAAGAAGCGGAAGTTGAGCACAGGAAGAAGAGTGGAACGTGTGGCGTGGAGAAGAAAATCCACGAGTGCCCCGTATGTTTCAGAGTCTTCGCTTCGGGTCAAGCACTTGGGGGACACAAGAGAACTCATGTTACTGGGTCAGCACCTGCAACAGTTCCATCAACTTCAGCAAAGTTTGGAAACAGCTTCATAGATCTCAACCTTCCGGCTCCGATTGACGAAGACGAGGCTAGCCAAATCGAGAACTCTGCTGTGTCGGATGCAGAATTCGTCAAAACCCGATAG | 1161 | 0.4953 | MDKHKCKLCFKSFSNGRALGGHMRSHMMNLPLSKPEEASPRTIQLSFEADSASSSSSSSSDDDEDGDKGLCYGLRENPKRSIRLVDPEFSFAAADTGSAILHDRESESESSKSNPTRKRSKRPWNNNNNNNNSNYYYYNDNNNNNDTNNYSTPSMKKQVFGTEHEALMKKKSKTESWVDHEPASSVSEATTEEDVAFCLMLLSRDKWKRHKEQPQFVEVEDQYEEEEEEEEEEEDEAFEESEESQETMKLCKSRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNVKMDGEEAEVEHRKKSGTCGVEKKIHECPVCFRVFASGQALGGHKRTHVTGSAPATVPSTSAKFGNSFIDLNLPAPIDEDEASQIENSAVSDAEFVKTR* | 387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phacun42g00043 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 259 | 286 | IPR013087 | - | |
| Phacun42g00043 | 386 | MobiDBLite | consensus disorder prediction | 367 | 386 | - | - | |
| Phacun42g00043 | 386 | SMART | c2h2final6 | 313 | 335 | IPR013087 | - | |
| Phacun42g00043 | 386 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
| Phacun42g00043 | 386 | SMART | c2h2final6 | 259 | 281 | IPR013087 | - | |
| Phacun42g00043 | 386 | Coils | Coil | 216 | 247 | - | - | |
| Phacun42g00043 | 386 | MobiDBLite | consensus disorder prediction | 32 | 74 | - | - | |
| Phacun42g00043 | 386 | MobiDBLite | consensus disorder prediction | 44 | 59 | - | - | |
| Phacun42g00043 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 313 | 340 | IPR013087 | - | |
| Phacun42g00043 | 386 | MobiDBLite | consensus disorder prediction | 219 | 242 | - | - | |
| Phacun42g00043 | 386 | SUPERFAMILY | beta-beta-alpha zinc fingers | 258 | 335 | IPR036236 | - | |
| Phacun42g00043 | 386 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 315 | 335 | IPR013087 | - | |
| Phacun42g00043 | 386 | Pfam | C2H2-type zinc finger | 313 | 335 | - | - | |
| Phacun42g00043 | 386 | Pfam | C2H2-type zinc finger | 258 | 283 | - | - | |
| Phacun42g00043 | 386 | Pfam | C2H2-type zinc finger | 4 | 27 | - | - | |
| Phacun42g00043 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
| Phacun42g00043 | 386 | MobiDBLite | consensus disorder prediction | 100 | 149 | - | - | |
| Phacun42g00043 | 386 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
| Phacun42g00043 | 386 | MobiDBLite | consensus disorder prediction | 371 | 386 | - | - | |
| Phacun42g00043 | 386 | MobiDBLite | consensus disorder prediction | 100 | 116 | - | - | |
| Phacun42g00043 | 386 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 31 | IPR036236 | - | |
| Phacun42g00043 | 386 | MobiDBLite | consensus disorder prediction | 217 | 249 | - | - | |
| Phacun42g00043 | 386 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 261 | 281 | IPR013087 | - | |
| Phacun42g00043 | 386 | Gene3D | Classic Zinc Finger | 256 | 335 | - | - | |
| Phacun42g00043 | 386 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 385 | IPR044303 | GO:0006355 | |
| Phacun42g00043 | 386 | MobiDBLite | consensus disorder prediction | 120 | 149 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phacun42g00043 | 1 | 372 | C2H2 Transcription Factor Family | AT3G60580 | 40.741 | 1.20e-65 | 209 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Phacun42g00043 | zf-C2H2_6 | 3e-13 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phacun42g00043 | - | - | vra:106780254 | 628.246 |