LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phacun402g00023	ATGGAGAAAGCAGGAGGAGTACTATCGGCGAAGGAGGCATTCGAGAAGCTTGAAAAGGTTGGAGAAGGGACGTACGGAAAGGTGTACAGGGCAAGAGAAAAGGCCACTGGGAAGATCGTTGCCCTCAAGAAGACTCGCCTCCATGAGGACGAAGAAGGTGTTCCTCCCACCACCCTCCGCGAGGTTTCCATTCTGCGGATGCTCTCGCGCGATCCCCATGTCGTCAGGTTAATGGATGTCAAACAAGGTCTGAACAAGGAAGGCAAGACAGTGCTCTACTTGGTATTTGAGTACATGGATACCGATCTCAAGAAATTCATTCGCTCTTTCCGTCAAACTGGAGAATCAATTCCACCTCCAACCATCAAAAGCTTGATGTACCAACTTTGCAAGGGCGTTGCTTTCTGCCACGGCCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGGAAAACAATGATGCTTAAAATAGCTGATCTTGGACTCGCTCGAGCATTCACTGTACCAATTAAGAAATATACGCATGAGATACTTACCCTGTGGTATAGAGCCCCTGAAGTTCTTTTGGGAGCCACCCATTACTCAATGGCTGTGGATATCTGGTCTGTTGCCTGCATTTTTGCCGAACTTGTCACCAAGCAAGCACTCTTTCCTGGTGATTCCGAGCTTCAACAACTCCTTCATATATTCAGGCTGTTGGGCACTCCTAATGAAGAAGTGTGGCCAGGCGTGAGTAAACTAATGAACTGGCATGAATACCCCCAATGGAATCCTCAAAGTCTGTCAACGGCTGTTCCGAGTTTGGATGAGCTTGGAATCGATCTTCTATCTGTTAGTTATCCTTCTTGGCTAACTCTTTCTTAG	879	0.4755	MEKAGGVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGLNKEGKTVLYLVFEYMDTDLKKFIRSFRQTGESIPPPTIKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDIWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWNPQSLSTAVPSLDELGIDLLSVSYPSWLTLS*	293

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phacun402g00023	292	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	141	153	IPR008271	GO:0004672\|GO:0006468
	Phacun402g00023	292	SUPERFAMILY	Protein kinase-like (PK-like)	12	282	IPR011009	-
	Phacun402g00023	292	SMART	serkin_6	14	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phacun402g00023	292	Gene3D	Transferase(Phosphotransferase) domain 1	102	283	-	-
	Phacun402g00023	292	FunFam	Cyclin-dependent kinase B2,2	10	100	-	-
	Phacun402g00023	292	PANTHER	CELL DIVISION PROTEIN KINASE	12	281	-	-
	Phacun402g00023	292	ProSitePatterns	Protein kinases ATP-binding region signature.	20	43	IPR017441	GO:0005524
	Phacun402g00023	292	ProSiteProfiles	Protein kinase domain profile.	14	292	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phacun402g00023	292	Gene3D	Phosphorylase Kinase; domain 1	9	100	-	-
	Phacun402g00023	292	FunFam	Cyclin-dependent kinase 2	102	286	-	-
	Phacun402g00023	292	Pfam	Protein kinase domain	14	251	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phacun402g00023	7	282	Core Cell Cycle Gene Families	AT1G20930	87.319	0.0	511

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-Pl	Phacun402g00023		Pkinase	7.4e-62	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phacun402g00023	K07760		-	gmx:547738	551.206