Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun402g00002 ATGGCGGGTCAGTGCTCCAATGAAGGCTCCAGTACTGGAAATATTTCAGCAGAGTGTTCAGATTCAACTGTTCAGCTCAATATCAAGACTCTGGATTCCCGCATCTACAGTTTTCAAGTGAACAAAAATATGCCTGTTTCGTTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGACTGATATTTAGAGGAAAAGTCTTGAAGGATGAACATGTTCTTTCTGAGTATCATGTTGAGAATGGACATACATTGCATTTAGTTGAAAGACAACCAAATCAGCCGCAGGCTTCTGGTACAAGTGCTGATGAGCCCACTGGTACGAGTAGTAACCGAGGTCCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACATTTAACGTGGGGGAACAGGGCGAAGGAATTGTTCATGACCTCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAACGGTGGCCAGAGTACAGTTAATGGTCCTAATGCTGCGCAAACTTCTTCAGCTCACCCAGGCAATGAAACTGAAGGAATACATGCTGGAAATCAAAACCCAGCAGGAAACCAGGCACCATCTGGACAAACATTTCATGGTCCGACATTCCAATCTGTGTCTCATGTTGTTCAGATTCCTGCAGCAGCTGGATCCATACCCCTCCCATCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGATTGAGTTTATGAATCGAATGGAACACACACTGACACAAAATGGTTATCAGTCAAATTTTTCACCAGCTAACCCTGGAGATCAGCGAGTGGAATTGCCTTCTAATTCACAAGGGTTGCCAAATCTTGAAGCATTAAGTATTGTCTTGCGTCATGCAGAACGGTTACTTGGTGGTCAAGCTCTTGCTGCACTATCTGGAGCTGAAGTACTTTTGAAGAAGGATATCCTTGGACGCTTGGAAAGAGAAAGAGCTTCTGCTGATCCTCGTATAAGAGGTCAAATACAGTCAGAGTCAGTGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGGACAATGTTGACATTGCGAATGGGACAATCTTCTGCAGAATCGGTTGTTAACGCTGGACCAGCTGTTTACATTTCTCCATCAGGGCCAAATCCTATAATGGCGCAGCCTTTTCCACTTCAGACAACCTCCCTCTTTGGTGGTCCAGTTCCCTCCTCAACTCCTGCTACTTTGGGTACCATTGGTATTGGAAGTGCTCCTAGGAACGTAAACATTCATATACATGCTGGTACCTCTCTTGCACCAATTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGAGAAGGGACAAGAAGTGAACAGCATAATGAGCCTGGTTCTGGTGGTTCAGGTTCATCACGGGTACTACCTGTTAGAAATGTCATAGCCACAGCTATCCCATCACACCCTCCTGGTGTTGGAGTCTCTAGTAGCACACAAACTGGGTTTGGTGTTTCTACTTCACAGCCACCTGATTCAGCCTCATTGTCATCTGTTTTAGCTGAAATTGATTCTCGCCTTAGGAATGTTGTTGGTAGTATGCAAGGGGATAACACAGTTCCATCAGGGGAAATGGAATCAATCAGCAGGGACTTGTCTTCTGGATCTGAATCAAGACCTTCTACACTAAATGCACAGCAAGATACAACGGAAATGAATGGTGTTGGGGCTGCCAGTGCTTCCTTAGTTGGCTGTACTTCTGAAAGTGAGGCACAGAAGCTCCAAACTGAGGCAGGCCAAACCTCTAGTAATGATGAGAGAGATACAATAGTAAAACCAGAAAATGACATCGATGTTCCAGCGGTTAGTGACAGACAAGATGTAACTGAACCTGCCAAAGCAGCTCCACTAGGATTGGGTGTGGGTGGCTTAGAGCGTAAGGCTGCTGAATGA 1950 0.4482 MAGQCSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVNKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQPQASGTSADEPTGTSSNRGPPRNRVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTVNGPNAAQTSSAHPGNETEGIHAGNQNPAGNQAPSGQTFHGPTFQSVSHVVQIPAAAGSIPLPSLNAPIPDSLNTLIEFMNRMEHTLTQNGYQSNFSPANPGDQRVELPSNSQGLPNLEALSIVLRHAERLLGGQALAALSGAEVLLKKDILGRLERERASADPRIRGQIQSESVQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNAGPAVYISPSGPNPIMAQPFPLQTTSLFGGPVPSSTPATLGTIGIGSAPRNVNIHIHAGTSLAPIVSAIGSRPNNGEGTRSEQHNEPGSGGSGSSRVLPVRNVIATAIPSHPPGVGVSSSTQTGFGVSTSQPPDSASLSSVLAEIDSRLRNVVGSMQGDNTVPSGEMESISRDLSSGSESRPSTLNAQQDTTEMNGVGAASASLVGCTSESEAQKLQTEAGQTSSNDERDTIVKPENDIDVPAVSDRQDVTEPAKAAPLGLGVGGLERKAAE* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun402g00002 649 MobiDBLite consensus disorder prediction 444 515 - -
Phacun402g00002 649 MobiDBLite consensus disorder prediction 490 515 - -
Phacun402g00002 649 MobiDBLite consensus disorder prediction 92 124 - -
Phacun402g00002 649 MobiDBLite consensus disorder prediction 449 473 - -
Phacun402g00002 649 SMART ubq_7 24 95 IPR000626 GO:0005515
Phacun402g00002 649 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Phacun402g00002 649 PRINTS Ubiquitin signature 55 75 IPR019956 -
Phacun402g00002 649 PRINTS Ubiquitin signature 76 97 IPR019956 -
Phacun402g00002 649 FunFam Large proline-rich protein BAG6 16 109 - -
Phacun402g00002 649 MobiDBLite consensus disorder prediction 583 649 - -
Phacun402g00002 649 MobiDBLite consensus disorder prediction 606 622 - -
Phacun402g00002 649 CDD Ubl_ubiquitin_like 26 93 - -
Phacun402g00002 649 MobiDBLite consensus disorder prediction 583 605 - -
Phacun402g00002 649 MobiDBLite consensus disorder prediction 162 209 - -
Phacun402g00002 649 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Phacun402g00002 649 MobiDBLite consensus disorder prediction 532 565 - -
Phacun402g00002 649 SUPERFAMILY Ubiquitin-like 19 99 IPR029071 -
Phacun402g00002 649 Gene3D - 13 108 - -
Phacun402g00002 649 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 647 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun402g00002 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 7.55e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun402g00002 - - pvu:PHAVU_001G0014001 1149.81