Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phacun372g00093 ATGGCGCACAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTTCCGATTATCTGCGAATCCTGCCTCGGCGACAGCCCATACGTTCGAATGACCAGAGCAGAGTATGACAAGGAGTGCAAGATATGTACACGGCCATTCACTGTTTTTCGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGTCAAACATGCAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATACGGACTACCAGTTCAAGTTCGGGACACTGCTCTGAGTATTGATTCCAATGATGCCATTCCAAAGAGCGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGACCGTAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTACGGTAAAGTACACCCAAATGATACTATCATGAAGCTTCAAAGGACAACACCGTATTACAAGAGAAACCGAGCACATGTTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAGTGCCCTTATCGACATGAGATGCCAGTTACTGGGGAGTTGTCTCAACAAAATATTAAAGATCGTTATTATGGAGTGAATGATCCTGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGGCCACTCTGGAGGCTCCAGAGGATGAGAGCATTAAAACACTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTACGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGGGAAGGTGCAGAAAAAGCAGCAGAAGAACTCTCCAACAAATTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGAACTCAAAACCTGAGTCTGACAGTTCTGATCAAGCAAGGCAGCAGGCTTCTGTAGCTCACAGTGGATTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAATGCTTTACTATAACAATCCACTACCTCCTCAGCAGGAAAGAAGCTACTACCCATCAATGGACCCTCAAAGAATGGGTGCTCTTATTCCATCCCAAGATGGTCCTCCTGGTGGGCCTTCTGGGTCAGGGGAGAACAAGCTTGGTTTGGAAAAGCAGCAGATGCAACATTATCCCCACTCATTGATGCCTCCTCCACCTGGTCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCTCCAGCTACCCCGTATCATCATCAGTATCCACCTCCATACAATGCTGCAGGGCCTCCATCACAGCCACCTGCTGCAAATCATCCTTATCAGCATTCTATGCAGCCAGGGTCTGGACAGGCTGCAACTGCCCCAGCTGAAACTGGAACATCAACTTCAGGGCCACAGCAGCAATAA 1443 0.4699 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKVHPNDTIMKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQNSKPESDSSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPLPPQQERSYYPSMDPQRMGALIPSQDGPPGGPSGSGENKLGLEKQQMQHYPHSLMPPPPGQYHHQYYPPYGYMPPATPYHHQYPPPYNAAGPPSQPPAANHPYQHSMQPGSGQAATAPAETGTSTSGPQQQ* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phacun372g00093 480 Pfam Torus domain 136 194 IPR032297 -
Phacun372g00093 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Phacun372g00093 480 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 376 IPR039171 GO:0003723
Phacun372g00093 480 Gene3D - 212 312 IPR012677 -
Phacun372g00093 480 SMART rrm1_1 229 297 IPR000504 GO:0003723
Phacun372g00093 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Phacun372g00093 480 SUPERFAMILY RNA-binding domain, RBD 222 307 IPR035979 GO:0003676
Phacun372g00093 480 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Phacun372g00093 480 Gene3D - 148 208 - -
Phacun372g00093 480 MobiDBLite consensus disorder prediction 343 388 - -
Phacun372g00093 480 MobiDBLite consensus disorder prediction 449 480 - -
Phacun372g00093 480 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Phacun372g00093 480 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Phacun372g00093 480 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Phacun372g00093 480 MobiDBLite consensus disorder prediction 423 480 - -
Phacun372g00093 480 MobiDBLite consensus disorder prediction 423 448 - -
Phacun372g00093 480 MobiDBLite consensus disorder prediction 343 360 - -
Phacun372g00093 480 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Phacun372g00093 480 MobiDBLite consensus disorder prediction 299 321 - -
Phacun372g00093 480 MobiDBLite consensus disorder prediction 303 320 - -
Phacun372g00093 480 CDD RRM_RBM22 227 300 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phacun372g00093 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 5.24e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phacun372g00093 K12872 - gmx:100779917 879.011